Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01487 ATGTTGCTGCAGAGGAATTTCTGGGTTGTTTTAGTGTTGATTGCCGTGGTTTTTGGAACCAATTTGATGGTTGTTAAGGCATTGCCACGACGAATTCTCTTGGATACAGATGTGGATACTGATGATTTATTTGCTCTTTTGTACCTCTTGAAGCTTAATCGATCAGAATTTGAGTTGGAGGACTGCTATTACATTCTACAGGCAGTCACTATTAGCTCAAATGCTTGGACGAGTGCTGGACATGCAGTGAACCAAATTTATGACATTCTTTACATGATGGGCCGCGACGATATTGCTGTTGGAGTTGGAGGAGAAGGTGGAATACTCGATGATGGAACAATTCAACCTAACGTTGGTGGATATCTTTCCATAATTGAGCAGGGGTTGACGACTACAGGCGGATGTAGATATAGACAAGCCATTCCTGTTGGTATTGGAGGGCGATTAGATGCTGATACCAACTATGGGCTTCGCAAAGCATTCCTCCCACAGGGAAGCAGGAAGTATAATCCTTTGCAACAATCGACTGCTCAGCAGGTGATGATAGACACAATATCTGAAGGCCCCATTAATGTATTCCTTATAGGATCACACACAAATTTTGCTATTTTCCTCATGGGTAATCCACACCTAAAAAAGAATGTTGAGCATATTTATGTAATGGGTGGTGGTATAAGATCAGAGAACCCAACTGGCTGCTGTCCAGAAAATGGCAGCCGATCTTGCACTCCTCGACAATGTGGTGATCCTGGTAACATATTCACAGATTACACTAGTAATCCTTATGCAGAATTCAATATCTTCGGAGATCCTTTTGCAGCATATCAGGTGATTCATTCTGGAATTCCACTCACCATTGTTCCACTGGATGCTACAGACACCATTCCTGTAACTAAGAATTTCTTTGAAGTATTTGAACAGAATCATGATACAGTTGAGGCACAATATGCATTCCAATCCTTGAAAATAGCTCGTGATTTTCGGCTTGGCAAGCAATTTTATACAGTAATTTCTGAAATGCTCTCCTCCTCTCCAATGCCCTGTGGTCTGTATGGAAACTATTTCATGTGGGATTCTTTCGCATCTGGTGTGGCAACATCTATCATGCTTAACTCGCGTAACGATGATGGTCAAAATGATTTTGCTCTGATGGAGTACATGAATATAACTGTAGTTACTTCAAATAAACCTTATGGTATATCTGATGGGTCAAATCCATTCTTTTATGGACGTCAAATTCCAAAATTCGGTCTTGAAAAAGGTGGGGTGCACAGTGGCCATGTTCAAACAGGACTTCGAGATCCCTTTTGCGTTGTGAATAATGGAAAAGGGAAATGTCAGGATGGTTATACCGCAGAGGTAATGGGTCTAGAGGGAGTGCACGTTTTGGTTGCTACAAGAGCAAAGCCCAACCGGAACATCACCAGTCCTCTTGACAGAGAATTTTACATAGGTTTCTTAGATGTTATTAACAGTCCTATAAACACAGGAAGATTCAATTTTACCACACAATTCCCATATTACGAGCAAGTTATGTACATACCAGATTTCAGAAATGTTAAACTGGGGAAACCTGTTGTGATTGATATGGATATGAGCGCTGGAGATTTTCTTGCTTTGTTCTATCTTTTGAAAGTACCTGTGGAAGTTATTGACATTAAGGCAATAATAGCCAGTCCAACAGGATGGGCAAATGCTGCAACAATAGATGTTATCTATGACCTACTGCATATGATGGGTCGAGATGACATACCAGTAGGTCTTGGAGACGTATTTGCAGTAAACCAATCAGATTCAGTTATGCCTATTGTTGGGGACTGTAAGTATGCCAAAGCCATTCCAAATGGGTGTGGTGGATATTTGGACTCTGACACTCTTTATGGTCTTGCTCGTAATTTGCCCAGAAGCCCAAGAAGGTACACAGCAGAACACCCAGTAAAACGTGAAGCTCCTCAGAACTCTCAGCATCCTGAACTGAGACAACCTCTAGCCCTGGAAATTTGGGAATCCATATTGGCAACATTGGAACCTGGGTCCAAGATTTCAGTGCTTACCAATGGACCATTGACTAATTTAGCAAAGCTTATAACATCAAACAAAAATGCAAGCTCCCTTATTCAGGAAGTTTATATAGTTGGGGGACACATCAAGGATGATGATACGGATAAAGGAAATGTCTTCACTGTTCCTTCAAATATATATGCAGAATTCAATATTTTTCTTGACCCCTTAGGAGCAAAGACTGTGTTCGAGTCGACAGTTAATATGAAGTTAGTTCCCCTCGGCATCCAGCGATATGTCAGCTCATTTGAAAATGTATTAGAAATTCTCTGCAAGAAAAAGGGGACACCCGAGCTTCTCTTTGCCAATCGTTTGCTGTCAAGACTCTTTCGTTTGAAGCAATCAGACATCTGTTATAAGCATGTGGGTACTTTCTTGGGCGAAATTCTTGGCGCTGTAGTACTGGCTGATGAAGATCTTGTCCAGCCAGTTTTTCAATTCAAGCCTGTAAAAATCTTGGCAGATGGTGTTGAATCTCAAGATGGCCAAACAGTCATCAATGAGAAGGGTGGGAAATTAATCCAAATACTGCAGAATTTGAACCAAACAGCCTACTTTGATCTATTTGCAAACCGGCTAAGCGATAAGAAACAATCTGCAGTGATTCAAAGCTTTAACGACCAGAAAAGAATGTGGTATACACTACGAAATCACACCTGTAATTATTGCCATGGTTCATGTGTTAACTGA 2751 41.0 MLLQRNFWVVLVLIAVVFGTNLMVVKALPRRILLDTDVDTDDLFALLYLLKLNRSEFELEDCYYILQAVTISSNAWTSAGHAVNQIYDILYMMGRDDIAVGVGGEGGILDDGTIQPNVGGYLSIIEQGLTTTGGCRYRQAIPVGIGGRLDADTNYGLRKAFLPQGSRKYNPLQQSTAQQVMIDTISEGPINVFLIGSHTNFAIFLMGNPHLKKNVEHIYVMGGGIRSENPTGCCPENGSRSCTPRQCGDPGNIFTDYTSNPYAEFNIFGDPFAAYQVIHSGIPLTIVPLDATDTIPVTKNFFEVFEQNHDTVEAQYAFQSLKIARDFRLGKQFYTVISEMLSSSPMPCGLYGNYFMWDSFASGVATSIMLNSRNDDGQNDFALMEYMNITVVTSNKPYGISDGSNPFFYGRQIPKFGLEKGGVHSGHVQTGLRDPFCVVNNGKGKCQDGYTAEVMGLEGVHVLVATRAKPNRNITSPLDREFYIGFLDVINSPINTGRFNFTTQFPYYEQVMYIPDFRNVKLGKPVVIDMDMSAGDFLALFYLLKVPVEVIDIKAIIASPTGWANAATIDVIYDLLHMMGRDDIPVGLGDVFAVNQSDSVMPIVGDCKYAKAIPNGCGGYLDSDTLYGLARNLPRSPRRYTAEHPVKREAPQNSQHPELRQPLALEIWESILATLEPGSKISVLTNGPLTNLAKLITSNKNASSLIQEVYIVGGHIKDDDTDKGNVFTVPSNIYAEFNIFLDPLGAKTVFESTVNMKLVPLGIQRYVSSFENVLEILCKKKGTPELLFANRLLSRLFRLKQSDICYKHVGTFLGEILGAVVLADEDLVQPVFQFKPVKILADGVESQDGQTVINEKGGKLIQILQNLNQTAYFDLFANRLSDKKQSAVIQSFNDQKRMWYTLRNHTCNYCHGSCVN 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22646001 22655695 - Lsi05G014880.1 Lsi05g01487 663979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01487 916 SUPERFAMILY Nucleoside hydrolase 29 399 IPR036452 GO:0016799
Lsi05g01487 916 PANTHER INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE FAMILY PROTEIN 8 901 - -
Lsi05g01487 916 PANTHER INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE 8 901 - -
Lsi05g01487 916 Gene3D - 21 401 IPR036452 GO:0016799
Lsi05g01487 916 Gene3D - 524 882 IPR036452 GO:0016799
Lsi05g01487 916 Pfam Inosine-uridine preferring nucleoside hydrolase 32 366 IPR001910 GO:0016799
Lsi05g01487 916 Pfam Inosine-uridine preferring nucleoside hydrolase 526 873 IPR001910 GO:0016799
Lsi05g01487 916 SUPERFAMILY Nucleoside hydrolase 524 880 IPR036452 GO:0016799
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01487 - - - csv:101216049 1634.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01487 Lsi-Chr5:22646001 Lsi06g00166 Lsi-Chr6:1779706 1.65E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g387 . . . . . . . . . . . Cma14g01653 . Car14g01487 . . Cpe03g01397 . . . . . . . . . . . . . . . . Cone7ag0188 . Lsi05g01487 . . Cme06g00677 . Blo07g00194 . . . Bpe13g00641 . Bma06g01525 . . Cmo14g01697 . . . . . . . . . . . . . Cla05g00603 Cam05g0664 Cec05g0673 Cco05g0668 Clacu05g0658 Cmu05g0627 Cre05g0696 . Csa03g01402 Chy06g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001428 0 17 1 1 1 2 2 2 2 2 2 1 2 2 2 2 2 3 2 2 2 2 3 3 3 2 2 2 3 2 74