Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01490 ATGGAAAATTCTCCTCCCTCGCCGCTCCCGCTTCCCTCACACGACGGCTCACACCGTCCCGACGCCGAAATGGACCTCCAACTACCCATGGCTGACGACTCCTCCACCGCTCTCTGGGACTTGGGGGATCTCCTCGACTTCGCTGCAGACGATCAGTTTTCCTTCTCTTTGGAACAGGACAATCTGCCCTCGGCCTCCTCTCATTACCTCGAGATTCAATCCCAGACTGCCCCTTCGAATTCGGAAAAAATTCGGAAGCGCGACCCGAGGTTGACCTGCTCGAATTTCTTGGCTGGGCGGGTTCCTTGTGCTTGCCCTGAGATTGACGCGATGCTTGAGGAAGAAGCCGCCGCTGCACCTGGCAAGAAGCGGGCTAGGACGGCGCGCGTGGCTGCTGGTACTGTTCGGTGTCAAGTACCGGGGTGTGAGGTCGATATTAGCGAGCTTAAAGGTTATCATAGAAGGCATAGGGTCTGTCTTCGTTGTGCTAATGCTACTGCTGTTGTGATCGATGAAGAGACTAAAAGATATTGTCAGCAGTGTGGCAAGTTTCATGTTTTATCTGATTTTGATGAAGGCAAACGGAGCTGTCGAAGAAAATTAGAGCGGCACAACAATCGACGACGTAGGAAGCCAGTTGATTCCACAACTTCTATGGAAAGTGATCGATCAAGCATGCATCTAGAAGATGTTTCTTGCGATGGTGATGTAGGGAAAGATAATATTCTTTTCAACAATCAAACTGATCAAAAGGAGGTAGTGCATTTGGAGTCTGAAGACGGGCTTGTAACCTCCACAGTATGTTCAGCTCCCGACCAGCAAAACAATGTGGATAGCGGGTTAACTTTAGTGGCAATGGGTGAAGCTCAAGTGGATGGAGGAGGAAAAGATAATTCTAAATCTCTTGCTTCATCATATTGTGACAACAAAAGCACATATTCATCAATGTGTCCAACAGGGCGAATATCATTCAAGCTTTATGACTGGAATCCTGCAGAGTTCCCTAGAAGACTTCGGCTCCAAATATTTGAATGGTTGGCTAATATGCCTGTTGAGTTGGAGGGATATATTCGGCCCGGTTGCATAATTTTAACTGCATTTGTTGCAATGCCAAAGTTTATGTGGATAAAGTTACTTGAAGATCCCACGGCACATGTGCACAATTTTGTAGTTGCACGTGGAAGACCTCTTTGGGGGAGGGGCAACATGCTTGTTTATTTGAACAACATGATTTTTCGCGCTGTGGAAGGGGAAAGTGTAATGAAAATTGAGATGGATATGCAGGCTCCAAGACTTCACTATGTACATCCTACATGCTTTGAGGCTGGAAAACCCATGGAGTTTGTTGCTTGTGGAAGTCATTTGCAACAACCAAAATTTAGGTCTCTTGTATCTTTTGCTGGAAAGTATCTTGCACATGATCATTCTTTTGTTCTTCCTCATTGTCAAAAAGAAGGTGATGCTAAGTGGAGCAACCACCAGTTGTTCAAGATATGTATACCCCACACAGAATACGATCATTTTGGCCCTGCATTTGTTGAGGTGGAGAATCAGTCAGGCTTGTCAAATTTTATTCCTATACTCATTGGAGATAGGGAAACTTGTTCTGAAATGAAAGCTATTCAGGAGCGGCTTGATATGTCTCTGCTTGTGGAAGCTACTGGTTCTTCACATGATACTTGCGAACATTCTTCACTGAAACAAAAAGTATATTCAGAACTCATGATGGATATATCTTGGTTGCTTAGAAAGCCTTCGTCAGAGCCTTTGCAGCAAATTATGAATTCATCACAAATTCAAAGATTCACACGTTTGTTGAAATTTTTGATATGCAATGACTCAACTGTCATTTTAGGGAGAGTCTTAGAACATCTTAAGATTGTCATGGAAAATGTAGAATCAAATGTGGCTGTTAATGGCTTCAGTTATCCCGATTTAAGGTTTTTTGAGAAGTATTTGGATTATGCAAGAGATGTTCTTCAACTGAATCTTCGTAAAACTGGGAATTCGGTGCTACACTTGGGATTTCTTAAGCCTAAAGGGGGCCATGTTTCTCAAAGTTGCTCCGAGAACAAATTAGTTTCAGTCGTTCCCGGGACTGGACTGGTGACTAAGAAGTCTACTGTAGAAACCTCTATTCAATTGATGACTGTGAGTGTCCACCGCTATGATGAAGAGAAAAAGGAGATGAAAATGGAGTCGAGAGAAAGTGGCCATTTTCAAGCAGTGGCAGGTTCAACCTCCAATGGTAGTGTGGAAACAATACCCCTTATAAACGAAAAGCTCGGCGAGAAAATGACGGTTCAAGAACATTCAAGAAAGTCATGTAGTCTTTTATTCTCAGGGGCTCATTTTAGGCGTCAGACAACATTATTTGCAGTTACCTTCGTTGCTGTTTGTTTTGGAATATGTGCAGCTTTAGTTCATTCTCACAAGGTCGGCGAGTTTGCTATTTCAATCCGCAGATGCTTGATCGATAAGTTGTAG 2487 43.75 MENSPPSPLPLPSHDGSHRPDAEMDLQLPMADDSSTALWDLGDLLDFAADDQFSFSLEQDNLPSASSHYLEIQSQTAPSNSEKIRKRDPRLTCSNFLAGRVPCACPEIDAMLEEEAAAAPGKKRARTARVAAGTVRCQVPGCEVDISELKGYHRRHRVCLRCANATAVVIDEETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPVDSTTSMESDRSSMHLEDVSCDGDVGKDNILFNNQTDQKEVVHLESEDGLVTSTVCSAPDQQNNVDSGLTLVAMGEAQVDGGGKDNSKSLASSYCDNKSTYSSMCPTGRISFKLYDWNPAEFPRRLRLQIFEWLANMPVELEGYIRPGCIILTAFVAMPKFMWIKLLEDPTAHVHNFVVARGRPLWGRGNMLVYLNNMIFRAVEGESVMKIEMDMQAPRLHYVHPTCFEAGKPMEFVACGSHLQQPKFRSLVSFAGKYLAHDHSFVLPHCQKEGDAKWSNHQLFKICIPHTEYDHFGPAFVEVENQSGLSNFIPILIGDRETCSEMKAIQERLDMSLLVEATGSSHDTCEHSSLKQKVYSELMMDISWLLRKPSSEPLQQIMNSSQIQRFTRLLKFLICNDSTVILGRVLEHLKIVMENVESNVAVNGFSYPDLRFFEKYLDYARDVLQLNLRKTGNSVLHLGFLKPKGGHVSQSCSENKLVSVVPGTGLVTKKSTVETSIQLMTVSVHRYDEEKKEMKMESRESGHFQAVAGSTSNGSVETIPLINEKLGEKMTVQEHSRKSCSLLFSGAHFRRQTTLFAVTFVAVCFGICAALVHSHKVGEFAISIRRCLIDKL 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22688528 22698154 - Lsi05G014900.1 Lsi05g01490 663982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01490 828 Gene3D - 132 198 IPR036893 GO:0003677|GO:0005634
Lsi05g01490 828 MobiDBLite consensus disorder prediction 1 30 - -
Lsi05g01490 828 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 34 825 - -
Lsi05g01490 828 ProSiteProfiles Zinc finger SBP-type profile. 134 211 IPR004333 GO:0003677
Lsi05g01490 828 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 825 IPR044817 GO:0003677
Lsi05g01490 828 MobiDBLite consensus disorder prediction 201 230 - -
Lsi05g01490 828 Pfam SBP domain 137 211 IPR004333 GO:0003677
Lsi05g01490 828 MobiDBLite consensus disorder prediction 208 230 - -
Lsi05g01490 828 SUPERFAMILY SBT domain 135 215 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01490 - - - csv:101205874 1412.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01490 Lsi-Chr5:22688528 Lsi03g01148 Lsi-Chr3:21778041 5.89E-21 dispersed
Lsi05g01490 Lsi-Chr5:22688528 Lsi02g00137 Lsi-Chr2:1113659 8.68E-22 transposed
Lsi05g01490 Lsi-Chr5:22688528 Lsi06g01398 Lsi-Chr6:24549992 3.94E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g384 . . . . . Bpe14g01158 . . . . Cma06g01455 Cma14g01651 Car06g01257 Car14g01485 . Cpe08g00222 Cpe03g01395 . . . . . . . . . . . . . . . . Cone7ag0187 Cone4ag0183 Lsi05g01490 . . Cme06g00679 Blo02g00570 Blo07g00193 Bda11g00547 . . Bpe13g00642 . Bma06g01524 . Cmo06g01456 Cmo14g01695 . . . . . . Bhi12g02132 . . . . . Lcy13g0944 Cla05g00605 Cam05g0666 Cec05g0675 Cco05g0670 Clacu05g0660 Cmu05g0629 Cre05g0698 . Csa03g01404 Chy06g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004916 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25377 PF03110 SBP 5.60E-27 No_clan Lsi TF