Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01496 ATGAATCAGTACCACATCTATGAAGCCATTGGCCGTGGAAAGTATTCGGTCAGAATACTTCACTCCCTTGATCATCCAAACGTACTCAAGTTTTACTCATGGTACGAAACTTCTGCTCACTTATGGCTGGTGTTAGAGTACTGTGTTGGAGGAGATCTCATGAGCATCCTGCGGCAGGATGGCAAATTACCTGAAGATTCAATTCATGATATTGCAAGTGATCTTGTCAGAGCATTGCAGTACTTACACTCGAAAGGAATCATATACTGTGATTTGAAGCCATCAAATATCCTATTGGATGAAAATGGTCATATAAGGTTATGTGATTTCGAACTAGCTAGAAAGTTGAGTGAGATATCAAAAACAAATTCATCGGTAGGTCGAAATCTTTTTATTGTAGTAATGCCACAAACAAAACGAGGCACACCCTGTTACATGGCTCCTGAATTGTTCAAGGACGATGGTACCCACTCCTACGCGTCTGATATGTGGGCTCTTGGTTGTGTCCTATATGAATGCTTTGTGGGGAGGCCTCCTTTTATGGGAAGAGAGTTCACTCAACTAGTAAAATCTATCCTCTCAGATCCTACCCCTATCCTTCCTGGGAGCCCTAGTCGTCCTTTTGTTAACTTGATTAATTCATTACTAGTAAAAGATCCAGCTGAAAGAATACAATGGCCTGAGCTTTGCGGTCATGCTTTCTGGCGAACTAAAATCACTCCAGTATCTTTACCTCCACAACCAGCTTTTGCAAATGTGATAAATCAACATTCTAAACCTTGTTTGTCGGAAAGAAATGGTGAAAAACTTGCTCAGAACAGGACTCCTCCTAAATATAGAGAGAAAGATGCAAAGGGCACCTTAAGACAAAATGAAAATTCTGCTTTTGGCTCAAGTAAAAATGAAACAATTGTTAAAGGTACTCCAGGCGGTCAAAAAACTCAATCAAAGGTTTCTAACGAAGTGGTTGAGGAGAAGAAGTTGAAAGAAACTCCATCTGCTTCCAAGGGAGTAAATCTTTTAAGACTTTCAAGGATAGCAAAATTAAACTTGCAAAGAGAGAATGATAAAGAAAATTATAGAAGACCCGTTTCTGGCAACTCTGAAAATGATTCTGAGGTTGAACTTAAGAACACTGATATGGAGCTTGATTTTAATGAGAATGTTGAAGATGAGTCTCATGATGAACCCGATGAGCCTGATAATTTAAATTGCAATCAGGAAGACAGGCCATCAAATGAGAATCATCAGGGGAAGATGGAGGAGGCTCAAAATATGGGAGAAGACCTTTCAGATTATTCACCGGCAGTTAATATCAATGCCTCAGATCTATCAATTAAACATGATCAGGAATCACCCTTGGTGCGTACAGAAGTGGTCGCTAGTTCACCTAGTGCTAGCCCTCAACTTAAGAACCAAAGAACTAAAGAAGGTCCAGCATATGCTCTTGATACCGATTCTTTGAAGTCATCCAATAACCTTTCAGAGTTTTTTTGGCATCAATCTGATCTTTCGGTTAAACCAGTAATGCCAAGCAAAAAAGCCGATAAAATGTCAGATGTTAATACTGCCACCCTTCCTTTTGAGGGATTGCAAGCTCCTGACTTTGTGAAGATGCCTAAGGAGCGGCAGGATGCCATGAGCAGTAGGATTATTGCTACTCTGAGTGGAAATACTAGTATTGGGGAGAAGCAAAACATGATTAGATATCTTGAGATGCTTAGTAATAATGCTGATGCAGCTAATATTTTGACCAATGGGCCCATAATGCTCATGCTTGTTAAAATGCTCAAGCAGTCCAAGGTTTTGCAATTGCGTGTTCAACTCACATCACTAATTGGCTTGCTGATTCGCCACTCTACTTTTATTGAGAATGACTTAGCAAATTCTGGTCTTTTATTTTCACTTACTGATGGCCTCAGAGACAAGCAAGAAAAAGTTAGGAGATTTTCTATGGCTGCTTTGGGCGAGTTGCTTTTTTATATCTCCACTCAGGAAGAGCATAATAGCAACGCCAATCCTCCAGAGTCTCCTTTGAAGGAGACTAGATCCCCCTCTGGATGGCAGGTTCCAAACTCATTAATTTCTTTAGTATCATCAATTCTTCGAAAAGGTGAGGATGATATAACTCAACTATATGCATTGAGGACCATTGAGAACATTTGTAGTCAAGGAGCAATCTGGGCATCTCGATTTACCAGCCAAGATGTGATCAGCAACCTATGCTACATATATAGAGCTTCTGGGAAATCGGAGAATATAAGGCTCACGGCAGGATCATGTTTAGTTCGCCTAGTCCGTTTCAATCCTTCTTGCATTCAGTCAGTTACAGACAAATTATCTTCGAAGGACATGGCATGTGCCCTAGTTAAGGGCAATCCACGTGAGCAGCAAATCACCTTAAATCTTCTAAACATGATCATGTTTGGAGGCCATATCTTAACCAGCATTGGAAGGTACCTTCTACCTTTAATGGAGGAGAAGAATCTTGTCTCCAGTCTTGTATCCCTTATTGAGCAGGGAAGTGAAGTTTTGAAGGGAAAGGCAATTGTTTTCGTGGCTTTCCTCTGTAAGAGTGTAAGACGATGGTTGCCTCACTTCTTTTGCAATGCTAGGTTACTTTCTTCAGTGGACAGGCTCGCGAGGGAGAAAGACATCTATGTCCAGCAGTGTTTGACTGGATCTGTGCATATTGTGGCATCTATCGTGCCAAGTTTGTTGGATATGATTATAGGAGATATTCAACAAATGATGGGAGGACGACGTCATGGGCATATCTCCTCCCCCCTTACCAGTCGTGCTGCTCCAAAGACCAACATTCACTTGTTTCCTGTTGTCCTTCATCTTCTTGGAAGTTTAACCTTTAAGCGCAAGGTTGTTAGTCCTCAGGTGCTGCAGCAGTTGTCTGATCTAATCAGGCATATAGAGACACCATTTCAGGGCAGGGATGACTTCCAGATAACATTACTTCGGGTTATTGAATCTATCACAGAGGAATTCTCGGTCATACTTGAAAACCCAGAGATTTTTGTCCATAAAATTCTCCCCAGTTTGGCTGTTCTATACAAAGGTAACAAGGATGGGGATGCAAGATTCTTATGCCTAAAAATTCTCTTTGATGTGATGGTCATTTTCCTGAATGAACCGTCCTTAGATGGGCAAAGGTTGGAGGATCTAAAGCAGATAGCAAATTTGCACTTCCTCCCTCTCTATCCTGCCTTGATAGAAGACGATGATCCCATACCCATGTACGCTCAGAAACTTCTCGTGATGCTCATTGAGTGTAATTACATCAAAATTTCAGACATTTTACATCTAAAGACAATCTCCCAATGCTTTGAGTTTTTGCTTGGCGACCTTTCAAATGCAAATGTAAGTAGTGTAAAGCTATGTTTAGCGCTGGCATCTGCTCCAGAAATGGAATCAAGAATTCTTTCTCAACTCAAAGTCGTTAGAAGAATAGGAATTCTGTTAGAGTTTGTGTATGCCAAGGATATGGAGGATTTTCTCGAACCAACACTTGGCCTTTGTAGAGCTCTCCTTCTGCGTTCTGTTAGTTGTAGAAAGGGCTTCATCTACTCAAAAGAACCGTTTCTTCTGGGTGACGGTACTCCCGAGCAAAATGTTCTTGTTAACCAGCAGGAATGCATTAGAGATATATCCGACTTTGGTAACAATTTTGGAGTTTTGTTGGAGTTGAGTGAGTCCTCAGAAGCAAATATTGCCGACATAGCCTCTGAATGTGTAGTATTTCTGGTTATGGCGGCTCCTAGGGAAGGCACCACTGGTCTCCTTACAAACCTTCACAAAGTAAGTGTAATCCTGGAGTCCTGGCGGAGAAGTGGCTGCCTCTTGCTTGTTCAGAGAATGCTGCATTCTCTCGGTTATGCTTGTCGACAGTACTTGGCCCATGCAATGATATTATCGCTTTCCATTTCTGAAATTTCACGGATTGAGACTATTATATCTGATATCAAGAGTTCAGGCACGCCACGTTTAGTTAATGATGCAATGCTTGTGGCTATGGAGTTGCAGCGGCTACATCGTTGTATTTGA 4056 41.32 MNQYHIYEAIGRGKYSVRILHSLDHPNVLKFYSWYETSAHLWLVLEYCVGGDLMSILRQDGKLPEDSIHDIASDLVRALQYLHSKGIIYCDLKPSNILLDENGHIRLCDFELARKLSEISKTNSSVGRNLFIVVMPQTKRGTPCYMAPELFKDDGTHSYASDMWALGCVLYECFVGRPPFMGREFTQLVKSILSDPTPILPGSPSRPFVNLINSLLVKDPAERIQWPELCGHAFWRTKITPVSLPPQPAFANVINQHSKPCLSERNGEKLAQNRTPPKYREKDAKGTLRQNENSAFGSSKNETIVKGTPGGQKTQSKVSNEVVEEKKLKETPSASKGVNLLRLSRIAKLNLQRENDKENYRRPVSGNSENDSEVELKNTDMELDFNENVEDESHDEPDEPDNLNCNQEDRPSNENHQGKMEEAQNMGEDLSDYSPAVNINASDLSIKHDQESPLVRTEVVASSPSASPQLKNQRTKEGPAYALDTDSLKSSNNLSEFFWHQSDLSVKPVMPSKKADKMSDVNTATLPFEGLQAPDFVKMPKERQDAMSSRIIATLSGNTSIGEKQNMIRYLEMLSNNADAANILTNGPIMLMLVKMLKQSKVLQLRVQLTSLIGLLIRHSTFIENDLANSGLLFSLTDGLRDKQEKVRRFSMAALGELLFYISTQEEHNSNANPPESPLKETRSPSGWQVPNSLISLVSSILRKGEDDITQLYALRTIENICSQGAIWASRFTSQDVISNLCYIYRASGKSENIRLTAGSCLVRLVRFNPSCIQSVTDKLSSKDMACALVKGNPREQQITLNLLNMIMFGGHILTSIGRYLLPLMEEKNLVSSLVSLIEQGSEVLKGKAIVFVAFLCKSVRRWLPHFFCNARLLSSVDRLAREKDIYVQQCLTGSVHIVASIVPSLLDMIIGDIQQMMGGRRHGHISSPLTSRAAPKTNIHLFPVVLHLLGSLTFKRKVVSPQVLQQLSDLIRHIETPFQGRDDFQITLLRVIESITEEFSVILENPEIFVHKILPSLAVLYKGNKDGDARFLCLKILFDVMVIFLNEPSLDGQRLEDLKQIANLHFLPLYPALIEDDDPIPMYAQKLLVMLIECNYIKISDILHLKTISQCFEFLLGDLSNANVSSVKLCLALASAPEMESRILSQLKVVRRIGILLEFVYAKDMEDFLEPTLGLCRALLLRSVSCRKGFIYSKEPFLLGDGTPEQNVLVNQQECIRDISDFGNNFGVLLELSESSEANIADIASECVVFLVMAAPREGTTGLLTNLHKVSVILESWRRSGCLLLVQRMLHSLGYACRQYLAHAMILSLSISEISRIETIISDIKSSGTPRLVNDAMLVAMELQRLHRCI 1351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22783776 22789934 + Lsi05G014960.1 Lsi05g01496 663988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01496 1351 Gene3D - 546 909 IPR011989 -
Lsi05g01496 1351 MobiDBLite consensus disorder prediction 456 474 - -
Lsi05g01496 1351 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 17 1347 IPR044591 GO:0000911|GO:0000914|GO:0008017
Lsi05g01496 1351 MobiDBLite consensus disorder prediction 667 686 - -
Lsi05g01496 1351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 87 99 IPR008271 GO:0004672|GO:0006468
Lsi05g01496 1351 Pfam Protein kinase domain 17 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01496 1351 MobiDBLite consensus disorder prediction 448 478 - -
Lsi05g01496 1351 MobiDBLite consensus disorder prediction 289 318 - -
Lsi05g01496 1351 SUPERFAMILY ARM repeat 563 1041 IPR016024 -
Lsi05g01496 1351 MobiDBLite consensus disorder prediction 274 288 - -
Lsi05g01496 1351 MobiDBLite consensus disorder prediction 357 419 - -
Lsi05g01496 1351 Gene3D Transferase(Phosphotransferase) domain 1 2 302 - -
Lsi05g01496 1351 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01496 1351 SMART serkin_6 4 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01496 1351 MobiDBLite consensus disorder prediction 262 331 - -
Lsi05g01496 1351 SUPERFAMILY Protein kinase-like (PK-like) 2 256 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01496 K17545 ULK4; serine/threonine-protein kinase ULK4 [EC:2.7.11.1] - csv:101217007 2503.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01496 Lsi-Chr5:22783776 Lsi09g00536 Lsi-Chr9:5615035 6.23E-39 dispersed
Lsi05g01496 Lsi-Chr5:22783776 Lsi10g00018 Lsi-Chr10:296026 3.64E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g370 . . . . . Bpe14g01152 . . . . . Cma14g01648 . Car14g01481 . . Cpe03g01392 Bhi01g00926 . . . . . Lcy11g1459 . . . . . . . . . Cone7ag0183 Cone4ag0178 Lsi05g01496 . . Cme06g00683 Blo02g00576 . . . . . . . . . Cmo14g01692 . . . . . . . . . . . . . Cla05g00610 . . . . . . . Csa03g01408 Chy06g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009196 1 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83667 PF00069 Pkinase 5.10E-54 CL0016 Lsi PK