Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01499 AAATGTGGAGATGAGGACAACAAATGTGGAAGTGAAGGCAAAAATTCGGCTTTCAGTAGACATTACATTACATATCACAACAATCCTCAAAACTCCATTCTTACCTTCTCCAATTTCCAAAACAACGCCTTCTTCTTCTTCTTCTTCTCTGTTCTCTTCAATATCCCATTCCCTTTCCCGGAAATTCGCTTCAATTTTCTCGCCATTTCCCCATCTTCTTCACAAATCCTCACTCTCTCTTCAGTTTCCATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGATGGATCCACGCCCGAAGTCGGCGATGCTTTGGCCCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTTTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCTGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGTCGCTCATTTTTGGCCTTTGGTTTTGGCGACAGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTTTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGGGCTCCAGCCTCCAGGAGGCGTTTGATGTTGACTGTACGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAACGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCGAGTCGTATAGACTTTCTTCCATCATTGAGATTTTCATGGTCAAAATCGAATAATCACACGGACAATCAACCATCGGGATCTTCAACTAATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCGCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGACTTGCCGGACCTGAACATGAGAAAATCATCCTTCAATTTGGAAAAGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGAGACATCTCTGATCAGGACCATGTCAGAGCACGCATTGAGATTTTCTCTCAACAACAAGAAGTAT 1548 45.16 KCGDEDNKCGSEGKNSAFSRHYITYHNNPQNSILTFSNFQNNAFFFFFFSVLFNIPFPFPEIRFNFLAISPSSSQILTLSSVSMSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPPRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSVAHFWPLVLATALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRAPASRRRLMLTVRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSPSRIDFLPSLRFSWSKSNNHTDNQPSGSSTNQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKERIYLQWTTDIQSQRFKLLPSASVALTQRSLVNETSLIRTMSEHALRFSLNNKKY 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22828303 22833223 + Lsi05G014990.1 Lsi05g01499 663991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01499 516 SUPERFAMILY F-box domain 111 161 IPR036047 GO:0005515
Lsi05g01499 516 PRINTS Tubby superfamily signature 425 441 IPR000007 -
Lsi05g01499 516 PRINTS Tubby superfamily signature 244 260 IPR000007 -
Lsi05g01499 516 PRINTS Tubby superfamily signature 273 297 IPR000007 -
Lsi05g01499 516 PRINTS Tubby superfamily signature 407 424 IPR000007 -
Lsi05g01499 516 PRINTS Tubby superfamily signature 322 349 IPR000007 -
Lsi05g01499 516 Gene3D Tubby Protein; Chain A 178 489 IPR025659 -
Lsi05g01499 516 Pfam Tub family 179 461 IPR000007 -
Lsi05g01499 516 Pfam F-box domain 121 165 IPR001810 GO:0005515
Lsi05g01499 516 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 84 461 - -
Lsi05g01499 516 SUPERFAMILY Tubby C-terminal domain-like 167 461 IPR025659 -
Lsi05g01499 516 ProSitePatterns Tub family signature 1. 425 438 IPR018066 -
Lsi05g01499 516 PANTHER TUBBY-RELATED 84 461 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01499 Lsi09g01396 CCT
Lsi05g01499 Lsi09g01396 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01499 Lsi-Chr5:22828303 Lsi08g00296 Lsi-Chr8:7776228 1.05E-120 dispersed
Lsi05g01499 Lsi-Chr5:22828303 Lsi09g01396 Lsi-Chr9:21999286 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25379 PF01167 Tub 6.70E-79 CL0395 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01499 K19600 - csv:101217713 704.516