Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01501 ATGGGGTGTGTTTTTGGGCGAGAGGTATCTGAGAATCCCGTCCAGAAAGAGGAGGTAGAGGAGAGACAGAAGGCGGAGGAGGAAATTAGGGTTTCTGTGAAACCGGAGGTTTCTCAGGTTCAGGCTAATAATGCTCGCAATGGGGGAAGTAGAAAGGAGGTTGAAGATGATAGAGGTTCGAGACAGAGAAGTGAGCGGCGGCGAAGGCCGAATCCGAGATCGAGTAATCCGCCGAAACATGTGCATGGCGAGCAAGTCGCCGCCGGATGGCCTTCTTGGCTCTCCGCTGTCGCCGGTGAGGCTATCAACGGATGGATTCCTCGCCGTGCTGACTCTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACATATAGTAATGTGTACAAAGCAAGGGACACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGATTTATGGCCCGAGAAATTCTCATCTTGCGACGTCTGGATCATCCAAATGTTGTAAAACTCGAAGGTCTGGTGACATCCCGGATGTCGTGTAGTTTATATCTCGTATTTGAATACATGGAGCACGATTTGGCTGGACTTGCTGCGAGCCCCGGTATTAAGTTTACAGAACCGCAGGTTAAATGTTACATGAACCAATTATTATCAGGGCTCGAACACTGTCACAACCGTCATGTTCTGCATCGTGATATAAAGGGATCAAATCTTCTGATTCGTAATGATGGGATCCTTAAGATAGCTGATTTCGGATTGGCTTCCGTCTTTGATCCCAACCACAAGCAGCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCTACTGATTATGGTGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTGTTAGCTGGAAAGCCTATCATGCCCGGTCGTACGGAGGTCGAGCAGCTGCATAAGATATTTAAGTTATGTGGCTCTCCTACGGACGAATACTGGAAAAAGTCGAGGTTGCCTCATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATAACAGAGACATTTAAAGACTTCCCACCATCGTCTCTGCCACTAATCGAGACACTTCTTGCAATCGACCCAGCTGAACGCCTGACCGCCACTGCTGCTTTACATAGTGAATTTTTCACTACCAAGCCATATGCTTGTGAGCCATCCAGCCTCCCCAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGTAGATGGGGTGAAGAAATCACGGGCACGTGATCGAGCTGTTCGTGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTCGATAGGCGGCGTCTCATAACACACGCGAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCACTTGGCTACCCGCTCGGATCTTCGCATCATATCGATCCAATCTATGATCCTCCCGATGTTCCATTTAGCACGATGAATTTCTCGTATCCAAAAGCAAACATTCACACATGGTCTGGTCCTTTGATGGATCCAGCTGCTGTTGGTGCTCCAAGAAGGAGAAAACACACAGCAGGTGATGGACATTTGTCAAAATCATCTAAGGACTTACGAAAAGATAAAAATTCTGCTCGGATCTAA 1716 47.44 MGCVFGREVSENPVQKEEVEERQKAEEEIRVSVKPEVSQVQANNARNGGSRKEVEDDRGSRQRSERRRRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIRNDGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTDEYWKKSRLPHATIFKPQHSYKRCITETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNVDGVKKSRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHIDPIYDPPDVPFSTMNFSYPKANIHTWSGPLMDPAAVGAPRRRKHTAGDGHLSKSSKDLRKDKNSARI 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22835363 22839712 - Lsi05G015010.1 Lsi05g01501 663993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01501 571 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Lsi05g01501 571 MobiDBLite consensus disorder prediction 1 85 - -
Lsi05g01501 571 PANTHER OS01G0367700 PROTEIN 56 553 - -
Lsi05g01501 571 MobiDBLite consensus disorder prediction 541 571 - -
Lsi05g01501 571 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01501 571 SMART serkin_6 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01501 571 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Lsi05g01501 571 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01501 571 PANTHER CELL DIVISION PROTEIN KINASE 56 553 - -
Lsi05g01501 571 MobiDBLite consensus disorder prediction 11 33 - -
Lsi05g01501 571 MobiDBLite consensus disorder prediction 535 571 - -
Lsi05g01501 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Lsi05g01501 571 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Lsi05g01501 571 MobiDBLite consensus disorder prediction 477 498 - -
Lsi05g01501 571 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
Lsi05g01501 571 MobiDBLite consensus disorder prediction 49 72 - -
Lsi05g01501 571 CDD STKc_CDK9_like 113 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00524 Lsi-Chr2:4517223 Lsi05g01501 Lsi-Chr5:22835363 0 dispersed
Lsi03g00150 Lsi-Chr3:2110348 Lsi05g01501 Lsi-Chr5:22835363 0 dispersed
Lsi05g01501 Lsi-Chr5:22835363 Lsi11g00052 Lsi-Chr11:603489 0 dispersed
Lsi08g00253 Lsi-Chr8:5723596 Lsi05g01501 Lsi-Chr5:22835363 6.63E-154 dispersed
Lsi05g01501 Lsi-Chr5:22835363 Lsi11g00478 Lsi-Chr11:5048834 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83668 PF00069 Pkinase 1.20E-68 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01501 K08819 - csv:101217952 1071.61