Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01512 ATGGGTGGGTGTTTTCCTTGTTTTGGATCCTCCGATGAAGATGGTAATGGTGTGAAGGAAGCTACTAAGAAGGATTCAGCTAAGGATGGCTCCACCGCTCAGTCTCACCATGTTACCAGAGTGGGCTCAGATAAATCGAAGTCACGGAGTGTATCTGATGCTAAGAAGGAGCCAACGGTTCAAAAGGATGGAACAACAGCACATATTGCAGCCCAAACATTTACATTTCGAGAGCTTGCTACGGCCACGAAGAACTTTAGATCAGAATGCTTGCTTGGAGAAGGGGGGTTTGGAAGGGTTTACAAAGGTCGCTTGGAGAGCACAGGACAGGTAGTCGCTGTGAAGCAGCTTGACCGTAATGGTCTTCAAGGAAATCGGGAATTTTTGGTGGAGGTTCTAATGCTTAGCCTGTTACATCACCCAAATCTTGTTAACTTGATAGGCTATTGTGCTGACGGGGATCAACGGCTTCTTGTTTATGAGTTCATGCCATTGGGTTCATTGGAAGATCATTTGCATGATCTTCCACCAGATAAGGAGCCCTTGGATTGGAATACTAGAATGAAGATCGCAGCTGGTGCTGCAAAAGGATTGGAATATTTGCACGATAAAGCAAACCCGCCTGTTATATATCGAGACTTGAAGTCGTCTAATATTCTTCTCGACGAGGGCTACCACCCCAAGCTGTCAGATTTCGGTCTTGCAAAACTGGGTCCAGTTGGTGATAAGACTCATGTCTCAACGAGAGTGATGGGAACATACGGCTACTGTGCTCCAGAGTATGCTATGACTGGTCAACTCACTCTCAAATCAGATGTATATAGTTTTGGAGTTGTCTTTCTAGAACTTATCACGGGGCGCAAGGCAATCGATAATACTAGAGGTCCGGGGGAGCATAATCTTGTGGCTTGGGCTCGGCCACTTTTTAAAGATCGCCGGAAGTTCCCTAAGATGGCTGATCCACTACTGCAAGGTCGATATCCCATGCGGGGACTTTATCAGGCATTGGCAGTTGCGGCAATGTGCTTGCAGGAACAGGCTGCAACAAGACCTCTAATCGGGGACGTTGTTACTGCTTTGACGTATTTAGCTTCCCAAACTTATGATCCTAATGCAGCTGCTTCTCAAAGCAATCGAATTGGTGGATCTACTCCACGAGCCCGAGATGAACGGAGAGGTTTTCCAGACGGACTGGATAGCCCTGACGAGCGTGGACGAGGACGTGGTTCCCCATCGAACTACAGAAACTCACCTGATTACCGAAAGAAAGACCTCCATAGGGAATTGAGTTGTGGAGGTACAGAGCTGAGCAAAATTGACACTGGAGGCGGATCTGGTAGAAAATGGGGATTGGATGAGCTAGAACGACAAGAATCTCTGCGAGACAGTCCTGTATATACTGGGAGAGCAAGGGAAACACCAAGGAACCGCGACCTAAACAGAGAACGTGCAGTTGCAGAAGCAAAAGAAATGAAGTTGCCAGTGCCTACTAGACTACAGTATCAATTGCATCCAAGTTTTACTGTTGTTGCTGGTGGTTCTTCTATGAGTGTGGAAAACAATGGTGAGAAAATTTCCTTTCCTTCTCCGGCAAGGACTGATTCTACTTTCTTAGGTTCTTCGACACGCAGCATTTATCTTTCCTCGATTCAAGTCGGTGCCGTCGTCGAGTTCAGATTGAACCACAAGCACAGCGGTGATGCTATTTCCTTTAACCATACTCTTGCCGAAATCTTGGTGGAATATGCTTCTGCGGTATACATATCTGATTTAACGGAACTGTTTACTTGGACATGCACAAGATGTGATGACCTGACTCAGGGGTTTGAAGTTATAGAACTGGTTGTTGATGTCCAGCATTGCCTACAGGCATATGTCGGAGTAGCAAAGAGTCTTAATGCTGTCATTATTGCTTTTAGAGGAACTCAAGAAAACAGCATACAGAACTGGATTGAAGACCTATACTGGAAGCAGCTTGACCTGATGTACCCTGGCATGCCGGATGCAATGGTGCACCATGGGTTTTATTATGCTTATCACAATACGACAATACGCCCTGCGATATTAAATGCTGTTGATAGAGCAAGGAAGTTCTATGGTAACCTTGACATCATGGTGACTGGACATTCAATGGGAGGGGCAATGGCAGCATTCTGTGGCCTTGATCTTGCAGTTAACTACAATTCCCAGAATGTCCAGGTTATGACATTTGGACAACCTCGTATTGGCAATGCAGTATTTGCATCTTACTATAGCAATATAGTGCCAAATACGTTTCGAGTTACGAATGGGAATGATATCGTCCCCCATTTGCCTCCATTTTATTCTTATTTTCCTAAAAAGACGTATCACCATTTTCCTAGAGAGGTTTGGCTTTATAACGTTGGATTTGGAAGTTTTGTTTATCGAGTTGAAAAGGTTTGTGATGATTCTGGTGAAGACCCATCTTGTAGCAGATTTGTAATGGATCCTCCTTTGGCGGCATATGAAGCAACAGATCTAAACGGAAACCGAGTTTTCTCTAGGGATCCTGGAATTCCTCTTATCAGACTGAACGAACAATCGGTACTCAATGGCAAATCATGGTAG 2589 45.08 MGGCFPCFGSSDEDGNGVKEATKKDSAKDGSTAQSHHVTRVGSDKSKSRSVSDAKKEPTVQKDGTTAHIAAQTFTFRELATATKNFRSECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAAASQSNRIGGSTPRARDERRGFPDGLDSPDERGRGRGSPSNYRNSPDYRKKDLHRELSCGGTELSKIDTGGGSGRKWGLDELERQESLRDSPVYTGRARETPRNRDLNRERAVAEAKEMKLPVPTRLQYQLHPSFTVVAGGSSMSVENNGEKISFPSPARTDSTFLGSSTRSIYLSSIQVGAVVEFRLNHKHSGDAISFNHTLAEILVEYASAVYISDLTELFTWTCTRCDDLTQGFEVIELVVDVQHCLQAYVGVAKSLNAVIIAFRGTQENSIQNWIEDLYWKQLDLMYPGMPDAMVHHGFYYAYHNTTIRPAILNAVDRARKFYGNLDIMVTGHSMGGAMAAFCGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYSNIVPNTFRVTNGNDIVPHLPPFYSYFPKKTYHHFPREVWLYNVGFGSFVYRVEKVCDDSGEDPSCSRFVMDPPLAAYEATDLNGNRVFSRDPGIPLIRLNEQSVLNGKSW 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22909461 22919798 - Lsi05G015120.1 Lsi05g01512 664004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01512 862 MobiDBLite consensus disorder prediction 417 433 - -
Lsi05g01512 862 MobiDBLite consensus disorder prediction 372 481 - -
Lsi05g01512 862 Pfam Lipase (class 3) 636 775 IPR002921 GO:0006629
Lsi05g01512 862 CDD STKc_IRAK 92 361 - -
Lsi05g01512 862 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Lsi05g01512 862 Gene3D Phosphorylase Kinase; domain 1 56 162 - -
Lsi05g01512 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Lsi05g01512 862 SUPERFAMILY alpha/beta-Hydrolases 572 819 IPR029058 -
Lsi05g01512 862 MobiDBLite consensus disorder prediction 384 409 - -
Lsi05g01512 862 PANTHER OS07G0668900 PROTEIN 1 490 - -
Lsi05g01512 862 MobiDBLite consensus disorder prediction 16 31 - -
Lsi05g01512 862 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 490 - -
Lsi05g01512 862 CDD Lipase_3 572 792 - -
Lsi05g01512 862 Gene3D Transferase(Phosphotransferase) domain 1 163 381 - -
Lsi05g01512 862 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
Lsi05g01512 862 Gene3D alpha/beta hydrolase 572 831 IPR029058 -
Lsi05g01512 862 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01512 862 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01512 862 MobiDBLite consensus disorder prediction 40 62 - -
Lsi05g01512 862 Pfam Protein kinase domain 90 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01512 862 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00287 Lsi-Chr1:2543327 Lsi05g01512 Lsi-Chr5:22909461 1.36E-45 dispersed
Lsi03g01282 Lsi-Chr3:23652515 Lsi05g01512 Lsi-Chr5:22909461 3.68E-92 dispersed
Lsi03g02064 Lsi-Chr3:31958333 Lsi05g01512 Lsi-Chr5:22909461 0 dispersed
Lsi05g01512 Lsi-Chr5:22909461 Lsi09g01752 Lsi-Chr9:26197883 0 dispersed
Lsi08g00783 Lsi-Chr8:16217990 Lsi05g01512 Lsi-Chr5:22909461 4.89E-141 dispersed
Lsi09g01399 Lsi-Chr9:22020500 Lsi05g01512 Lsi-Chr5:22909461 2.54E-131 dispersed
Lsi05g01512 Lsi-Chr5:22909461 Lsi04g00826 Lsi-Chr4:7949316 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83669 PF00069 Pkinase 2.40E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01512 - - csv:101207561 981.474