Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01519 ATGGCCGCCATTTCAATTTGCTTTGCTCCACAAGCTCTCGCACGGCCCAGAGTTCGGAACCCTAGAAACATACCATCGCCCAAGAAGCTTGGTGGGAACAGCAAGCTCGATCGCAATAGCGTCAAGATCAAAACCAATTCGAAGGAGTTATCTTCCATTGGCGTTGAAGCCACCACTTACACTCGCCTCCCTCCCAGGGAAGACTTCGCTCTTCTTAGCTTTGATTCTCCGTCTTTTGATTCTGCTTCTTCTTCGAAGGATTCGTCTGAGGTGAAGCTTTTGGATTCGGATGTTGCGATAATTGAGGAGGAAGATGATTTGGATTCTTTGAACTATGAAGAGCGGGAGGAAGAGGAAGGGGAAGGAGGATTGGATGGTAATTTGGGGTTTGGGAATGGTTATGGGAAGTTTGAAGTGTTTGAGGGGGAATATGATTCTGAAATGGAGGAGTATGGTGATAGTGATGTGGAAGAGGAGGATGAAGAAGGAGAGAAGGTTTTAGCATTTAGGAAGGGGAAATTTGTTCATGCTGAAGAAGCTTATGACACTGGCGAAGAAGCAAGCTCTTTCCTCGACGTTGAAGATGGGAAGGAGAAGGGGCTGCCAGCTGTAATGCGATGCTTTGATCGAGCGAAAATCTACGTTAAAGCTGGAGATGGTGGTAATGGAGTTGTGGCATTTAGGCGAGAGAAGTATGTGCCAATGGGTGGCCCATCAGGAGGAGATGGAGGGAGAGGTGGGAATGTGTATGTTGAAGTCGATGAGTCGATGAATTCGCTATTGCCATTTCGAAATGGTATACATTTTCGTGCTGGAAGGGGTAGTCATGGGCAGGGGAAAATGCAAAATGGGGCAAAGGGTGAGGATGTAGTGGTGAAGGTGGCACCAGGAACTGTGATCAGAGATGCATTTAGCCACGAGGTTCTTTTGGAATTATTGCATCCGGGGCAGCGTGCTCTGTTGCTGCGTGGTGGAAGGGGTGGAAGAGGCAATGCATCATTCAAGTCCGGGACAAATAAGGTTCCAAAGATTTCAGAAAATGGAGAAGAGGGTTCAGAAATGTGGTTGGAGTTGGAGCTAAAGCTTGTTGCAGACGTTGGAATTGTGGGGGCACCAAATGCAGGGAAAAGCACACTTTTGAGCGTGATAAGTGCTGCACAGCCAGCCATAGCAAATTACCCTTTTACCACTCTACTCCCCAACTTAGGTGTAGTTTCTTTTGATTATGATTCAACTATGGTGGTAGCAGATCTTCCTGGATTACTTGAAGGGGCACACGAGGGCTTTGGTTTAGGCCATGAATTTCTACGTCACACCGAGAGGTGTTCTGCGCTGGTGCATGTGGTTGATGGATCGGGACCACAACCTGAATATGAATTTGATGCTGTTCGTTTGGAGTTGGAGCTCTTCAGCCCTGAACTAGCTGAAAAGCCCTATCTTGTTGCATATAATAAAATGGATCTTCCAGAAGCATATGAAAACTGGCCAGCATTCAAGGAAAAGCTACAAGCTCGCGGGATTGAACCTTTTTGCATGAGTGCAGTAAAACGAGAGGGCACTCATGAAGTCATTAGTGCTGCGTATCAGCTGCTAAGGGTGAATAAAGAAGCCAACAAGGAATTTCAAGGTGGGAAACTACCAGAGAATCTGGACCATGTGGCAGATAGAATACACAAGCAGCGTAGTGCTTCTATTGATGACTATGAAATTATTCATGATAGCGGTTCCAATGTATGGCATGTAGTAGGATCTGGTCTACAACGTTTTGTTCAGATGACAAATTGGCGTTACATGGAGTCTGAAAGAAGGTTCCAACATGTCATGGAGGCTTGTGGTGTTAACAAGTCTCTCAGAAAACTTGGCGTAAAGGAGGGTGACACAGTATTTGTTTCAGAGATGGAGATGATCTGGCATGATTCACCAAATAGTTCTGGTCCATCTAATATGAAGAAAAGATCAGATTCTGTCAAATGGCCAGAGTGGAAGTAA 1989 45.85 MAAISICFAPQALARPRVRNPRNIPSPKKLGGNSKLDRNSVKIKTNSKELSSIGVEATTYTRLPPREDFALLSFDSPSFDSASSSKDSSEVKLLDSDVAIIEEEDDLDSLNYEEREEEEGEGGLDGNLGFGNGYGKFEVFEGEYDSEMEEYGDSDVEEEDEEGEKVLAFRKGKFVHAEEAYDTGEEASSFLDVEDGKEKGLPAVMRCFDRAKIYVKAGDGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNGIHFRAGRGSHGQGKMQNGAKGEDVVVKVAPGTVIRDAFSHEVLLELLHPGQRALLLRGGRGGRGNASFKSGTNKVPKISENGEEGSEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHEGFGLGHEFLRHTERCSALVHVVDGSGPQPEYEFDAVRLELELFSPELAEKPYLVAYNKMDLPEAYENWPAFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLRVNKEANKEFQGGKLPENLDHVADRIHKQRSASIDDYEIIHDSGSNVWHVVGSGLQRFVQMTNWRYMESERRFQHVMEACGVNKSLRKLGVKEGDTVFVSEMEMIWHDSPNSSGPSNMKKRSDSVKWPEWK 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22970645 22976131 + Lsi05G015190.1 Lsi05g01519 664011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01519 662 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 364 532 IPR031167 GO:0005525
Lsi05g01519 662 PRINTS GTP1/OBG GTP-binding protein family signature 387 405 IPR006073 GO:0005525
Lsi05g01519 662 PRINTS GTP1/OBG GTP-binding protein family signature 432 450 IPR006073 GO:0005525
Lsi05g01519 662 PRINTS GTP1/OBG GTP-binding protein family signature 366 386 IPR006073 GO:0005525
Lsi05g01519 662 PRINTS GTP1/OBG GTP-binding protein family signature 415 430 IPR006073 GO:0005525
Lsi05g01519 662 ProSiteProfiles Obg C-terminal (OCT) domain profile. 560 639 IPR015349 GO:0000166
Lsi05g01519 662 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 2 168 612 - -
Lsi05g01519 662 TIGRFAM Obg_CgtA: Obg family GTPase CgtA 208 531 IPR014100 GO:0000287|GO:0003924|GO:0005525
Lsi05g01519 662 SUPERFAMILY Obg GTP-binding protein N-terminal domain 208 362 IPR036726 -
Lsi05g01519 662 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 168 612 IPR045086 GO:0003924|GO:0005525
Lsi05g01519 662 SUPERFAMILY Obg GTP-binding protein C-terminal domain 567 639 IPR036346 -
Lsi05g01519 662 MobiDBLite consensus disorder prediction 18 41 - -
Lsi05g01519 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 533 IPR027417 -
Lsi05g01519 662 Pfam GTP1/OBG 209 362 IPR006169 -
Lsi05g01519 662 Pfam Domain of unknown function (DUF1967) 569 637 IPR015349 GO:0000166
Lsi05g01519 662 Gene3D GTP1/OBG domain 203 362 IPR036726 -
Lsi05g01519 662 Gene3D - 569 640 IPR036346 -
Lsi05g01519 662 ProSitePatterns GTP1/OBG family signature. 417 430 IPR006074 GO:0005525
Lsi05g01519 662 CDD Obg 364 531 IPR031167 GO:0005525
Lsi05g01519 662 Hamap GTPase Obg [obg]. 206 532 IPR014100 GO:0000287|GO:0003924|GO:0005525
Lsi05g01519 662 Pfam 50S ribosome-binding GTPase 365 485 IPR006073 GO:0005525
Lsi05g01519 662 Gene3D - 363 542 IPR027417 -
Lsi05g01519 662 TIGRFAM Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 571 637 IPR015349 GO:0000166
Lsi05g01519 662 MobiDBLite consensus disorder prediction 640 662 - -
Lsi05g01519 662 ProSiteProfiles Obg domain profile. 205 363 IPR006169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01519 - - - csv:101207804 1142.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00036 Lsi-Chr4:524524 Lsi05g01519 Lsi-Chr5:22970645 8.92E-39 dispersed
Lsi04g01709 Lsi-Chr4:24431194 Lsi05g01519 Lsi-Chr5:22970645 3.82E-49 dispersed
Lsi05g01519 Lsi-Chr5:22970645 Lsi10g00666 Lsi-Chr10:9255903 5.40E-13 dispersed
Lsi05g01519 Lsi-Chr5:22970645 Lsi07g00612 Lsi-Chr7:6589880 1.37E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33