Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01521 ATGAAGCCGTACGGTCACTCTATTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGCTTCCGGACCTGATACAACCCATGGAGACTCGCTTTGGCCTTTGGGATCCAGGGAAAGGGAATCGTACCCTGAACGTCCTGAAGAGGCTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCCCGTGAGCGTACCGCGGTTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCCGAGCGAGTAGGGCAGCCTGTGTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAAGAGGTTCTCTCAGCCCTGTGTCGCTGAATTTCTATGGCTATCCATTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCAACGTGCAAATTTCATCACCCAGAACCGGCTGGCTTGCAGTTTCCAGCACCATCACCCGTTCAGGTTACACCAATGCCACCTCCAGTGCCTCCACCCTCTGTTTATCGTCCTGTGCAGTCTCCATCTGCTCATTCGTCGCAACAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCTGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCTAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACATGTTTCGCCTTCTGCGTCTGGCTTTGCAGGATCTTATCAACCCATGCCATCTGCTGGTCCGTCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAGTGTCAATATTACATGAGAACGGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACGTCAAGGCCAGGTGTTGTCCTTAGCCAACTAGGTCTTCCTCTACGTCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTTGACCACTCGATGGAACGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACGTTAGCCCCATCATCCTCATCCTCAGAGTTGAAGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAATCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCAAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCGTCAGTGGGCAGTACCTCCAGCACCACCGGTGTGGAGGGTCGTACTTGA 1443 49.62 MKPYGHSIEGSHSDPSPEWTASGPDTTHGDSLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERTAVLGGSRPGGREYPERVGQPVCQYYMRTGMCKFGASCKYHHPQQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPMPPPVPPPSVYRPVQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSASGFAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPGVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELKPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSVGSTSSTTGVEGRT 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22999375 23002807 - Lsi05G015210.1 Lsi05g01521 664013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01521 480 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Lsi05g01521 480 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Lsi05g01521 480 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Lsi05g01521 480 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872
Lsi05g01521 480 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872
Lsi05g01521 480 MobiDBLite consensus disorder prediction 13 27 - -
Lsi05g01521 480 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872
Lsi05g01521 480 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 14 462 - -
Lsi05g01521 480 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Lsi05g01521 480 SMART c3hfinal6 348 375 IPR000571 GO:0046872
Lsi05g01521 480 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Lsi05g01521 480 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Lsi05g01521 480 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Lsi05g01521 480 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Lsi05g01521 480 MobiDBLite consensus disorder prediction 278 299 - -
Lsi05g01521 480 PANTHER PROTEIN PHOSPHATASE RELATED 14 462 - -
Lsi05g01521 480 SUPERFAMILY CCCH zinc finger 306 329 IPR036855 GO:0046872
Lsi05g01521 480 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Lsi05g01521 480 Gene3D - 123 171 - -
Lsi05g01521 480 MobiDBLite consensus disorder prediction 403 480 - -
Lsi05g01521 480 MobiDBLite consensus disorder prediction 278 305 - -
Lsi05g01521 480 MobiDBLite consensus disorder prediction 424 480 - -
Lsi05g01521 480 SUPERFAMILY CCCH zinc finger 94 122 IPR036855 GO:0046872
Lsi05g01521 480 Gene3D - 300 385 - -
Lsi05g01521 480 Gene3D - 42 122 - -
Lsi05g01521 480 MobiDBLite consensus disorder prediction 1 44 - -
Lsi05g01521 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Lsi05g01521 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 351 375 IPR000571 GO:0046872
Lsi05g01521 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 329 IPR000571 GO:0046872
Lsi05g01521 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872
Lsi05g01521 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01521 Lsi-Chr5:22999375 Lsi10g01567 Lsi-Chr10:20091428 3.05E-76 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25383 PF00642 zf-CCCH 1.30E-07 CL0537 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01521 - - csv:101221033 823.928