Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01524 ATGCAACTCATGGCCCCGTCAAGAAAGTCCAGAAGTGTTAATAAGCGGTTTCCTTCTGCTAATGAGGCCTCCTCAAGCAAATACGTGGAAGATGCTATCAAAAGCAAGCAGAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCCCAATGGAGTAAGGATGAGGTTGAGCAGTTCTATGAAGCATATCGTAAGTATGGAAAAGATTGGAAGAAGGTAGCTGCTGCAGTAAGGAACCGTTCTACAGAAATGGTTGAGGCTCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCACTACAGCGTACTGAGAAAAGAAGAAGAAGAAGAAAGAAACAATGCACTATATAAGGATGCTCTTCAAATAGATTCTTTCTCCTCTAATAGCCCAGGACTCCTTCATGACCCCACTGCTGAACTGAAAATAAATTGTCAGAGAGACAGTGAAAGTGAACAAGAAAGCAACGAGGATTCTGGAGCAATAAGAAAGCCTCAAAAGCGATTGCGTGGAAAGTCACGGAATAACAACTCTAAAGGACCGGATGCACATTTTGGAGATGGTTCACAATCACAGTCACTTCCAACAAATTATGGCTGCCTGTCATTGTTGAAGAAGAGGCGTTCTGGAATTAAACCTCATGCTGTTGGAAAACGGACTCCGCGTGTTCCTGTATCATATTCATATGATAAAGATAGTAGAGAGAAGATTTTTTCACCCTCCAGGCATAATAGCAAGGCAAAGGTTGATGATCAAAATGAGGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCACAACGAGATGGTTCTCCTCAACTTTCACAGACACCAAATCCAAAAATAGAAGGTCATGTACTTTCACCTATCCGAAACGACAGGATGCGAAATGAATCAGACATGATGAGTATGAAGTTTCGATGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTGGGAAGCACTGGAGCTGATAATGCAGACTATGACCTGGGGAAAAATACTCGTGAGATTCAAAGAAAGGGTAAAAGGTACTATGGAAAGAAGCCAGAAGTTGAAGAAAGTATGTACAACCACTTGGATGACATTAAAGAAGCTTGTAGTGGGACGGAAGAGGGACAAAAATCAGGCAGTTTAAGGGGAAAACTTGAAAATGAGGATTTGGATGTAAAATCTGTGAGATCCTCTTTTAAGGGCCCAAGGAAAAGAAGTAAGAAAGCTCTATTTGGAGTTTATGGTTTAGTTGTAGCATTAGCACTTTTAGATTCCGAGTCTATTTTAAAACTACTGTACTTATCACATATCATTAGAAATGAATGTTCAGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTCTAATGATGCCAGACACTAATGCTGAGACTGGTAAAAGTTATTCCTCAGCTTGTCTCATGAAAGCTACTTATATGATGGCTTGGTTTTTCGTTATCATTATTACCGTTTTCATTCTTTTTGGGTTGTCAACAATCCTTCATCACTTGATGCATTTCTCTAAGTTGCATGTTTTCCTTTGTCTTTTTCTTTATAATACTACTGGGGGAAAGCTTACAGTAAGGTGGCGTATGAAACTGATTTTCTTGAAATATGAAGAAAATGTGATATTGGTAGTCATAAAAATTCGTGTGCCAGCTAGAAAAAAAAGATTAGAAGTTAATCAGTATAGCATGTCTGCAATTGGTAGAGGTCAAGTAAGTTGTAGTCTTCAGTTACTTGAAGCTGGGGCTAGCCATAAGTGGGTAGGATGTCGACCGTCTGCTAAGGTTAAAGAAGAAAATCTTGATGTCAAGGACAAGTCTAAAATGAAAGGGAGTCATTCAGTTGCTGGAGCTGAAATCTCTACTCTCAAAACATCTAAGGCGGGAAAAGCTTTTGGCAACAATGTTGGTCCTATTCCTGAAGCAGAGGGAATTCAAGGATCCAATAACGGAAATCGAAAAAGGAAATTGAAGTCTTCTCCATTTAAAATATCATCTAAAGATGAAGATAACAATGATTCTCGTGTCAATGACAATCTGAAAATCAAGGCTGCAGATGAAGCAAAGAGTTCTGTTGGTAAAGTTAAACGTTCCCCTCATAATGCTGGACCTGCAAAGTCTGGCAAAATATCAAAACCTCTAGATCATCACTCATCTTCAAGTACTGACCATAAAAGAGAAGATGGTGACTGTGCTTTATCCACAACACAAGTTCTAACAAATAATCAAATCAGCTTACCTACCAAACTGAGGAGCAGGCGGAAGATGAACCTGGGGAAGTCACAAAGAGATTCAAAGCATGCTGATAATACTTCAATTGATCAACTCAATATAACTACTCAATCAATAGATGATAGACCACATGATCTCAAGGAGCGGCATTCTAATTGCCTATCTTGGCATAAATTACGCAGATGGTGTGTTTTTGAGTGGTTCTATAGTGCCATCGATTTTCCATGGTTTGCAAAATGTGAGTTCGTAGAGTACTTAAATCATGTTGGATTAGGTCATATTCCTAGATTGACACGTGTAGAGTGGGGTGTTATTCGAAGTTCCCTTGGGAGACCACGGAGATTCTCAGCCCAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATGCTGAACTTCGTGCAGGCACAAGGGAAGGACTTCCAACTGATTTAGCTCGGCCATTATCTGTTGGACAGCGTGTTATAGCCGTTCATCCAAAAACAAGAGAGATCCACGATGGAAGTGTACTTACTGTTGACTATAGCAGGTGTCGTGTTCAGTTTGACCGTCCTGAACTTGGAGTTGAATTTGTCATGGTAATTATGTTTTATTTTTATGGCATCTTATTTGTTCTTGAGATTGCTGTAGATCTTTACAATTTCATATGGGCGTTTTCATCCAAAAGTGCTAAAGATTCCCAAATAAAACAAAGGTTTAAACTACATACTATGATCATGGGCATAGCAATTTGCTTACCATTGGTATTCTTTGCCGCAGATAATAACCTTTCAGGCTTTCAAATTTTATATTTAGTTATGTATGTTTCCGTCAATTGTTCTTTATTTATGATACTGTTTATCTTTATATTTGTCTCCTTCACACAGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGTGTGGCTCTTGATAAAATATTTGGGAATCTCAATGAGGTTAAGATTAATGGCTTACTGAAGGAAGCGAAGATTGAAGACTATATGAAATCAACCAGTAATGATAAACTTGATGGCACTGAGGGTTCTGTGTATATTTCCCCTTCCACTCATCATATCAACAAATTAATTAAACAAGCAAAGTCATCACATAGGCATTCGCGTATGCAACTAGAAGGTAGCAGTCTAGCAGAGCTGGAGCTATTTGATAAGGTCTTCTGTTACTATTCCATTATGTATAATCAACGAGTTGTTCGTGGCCAGGTTGACCTTGGGTGCTCTAATCTACAAGCTAAATTTGGGCTTAGTGAGACTGTCGGTATCCAACAGGAGGCAAGTTCCCAACCTTCTGCCCTTGCTCAAATTCAAGCAAAAGAAGCTGATGTTCATGCTCTTTCTGAATTGTCACGGGCACTTGACAAGAAGGAGGTGGTGGTGTCTGAATTGAAGCGCTTGAATGATGAGGTGTTGGAAAACCAAATAAATGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAATATGCTGCTGTACTATTACAGTTGAATGAAGTTTCCTCTGCTCTGTATTGCTTGAGGCAGCGCAATACGTATCAAGGGACTTCACCATTGATGTTCCTCAAGCCAGTGCATGATGTGGGGGACCCTTGCTCTCATTCTCAAGAACCCGGTTCCCATGTGGCTGAAATTGTGGGAAGTTCCAGAGCAAAGGCTCAAACAATGATTGATGAAGCAATGCAGGCGATTCTAGCTCTGAAAAAAGGAGAAAGTAATTTGGAGAATATTGAAGAAGCCATTGATTTTGTGAGTAATAGACTCTCAGTGGATGATTTGGCCTTGCCAACTGTGAGATCAGCAGCTGCAGATACTAGTAATGCCGCTCCAGTATCTCAGAATCATACATCAAACCCATCGACTGCTAATTATGTAGTTGGTCCCAAGTCCAATGGCCCATCCGACAAGACTGAAGTGGAGATCCCTTCAGAACTTATTGCACACTGTGTAGCCACTTTACTCATGATTCAGAGAGGGAGTGTTATACTGTTACTGTCGATTTATTGGAGTAGCGAGTTTTTCTTGTTTTGGGGAGGGCCTGGGAAGATATCTCAGCTGGTTGCTGTCAACTATGAACTTTTGCGCCGTTTGGTGATATTAGTTTTAGTTCTCCAAATCCTGATTGTTGCTAAAAACATGCAGAAATGCACAGAACGACAGTTTCCACCATCTGATGTCGCTCAGGTACTGGATTCTGCTGTCAGTAGTTTGCAGCCTTGTTGTCCTCAGAACCTTCCACTATATGCAGAGATACAGAAATGCATGGGAATTATAAGGAGCCAAATACTTGCGCTTATACCCACATAG 4644 40.05 MQLMAPSRKSRSVNKRFPSANEASSSKYVEDAIKSKQKKRKFADLLGPQWSKDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRKEEEEERNNALYKDALQIDSFSSNSPGLLHDPTAELKINCQRDSESEQESNEDSGAIRKPQKRLRGKSRNNNSKGPDAHFGDGSQSQSLPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSREKIFSPSRHNSKAKVDDQNEDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPIRNDRMRNESDMMSMKFRCSEMDEGGCELSLGSTGADNADYDLGKNTREIQRKGKRYYGKKPEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLENEDLDVKSVRSSFKGPRKRSKKALFGVYGLVVALALLDSESILKLLYLSHIIRNECSAFDALQTLADLSLMMPDTNAETGKSYSSACLMKATYMMAWFFVIIITVFILFGLSTILHHLMHFSKLHVFLCLFLYNTTGGKLTVRWRMKLIFLKYEENVILVVIKIRVPARKKRLEVNQYSMSAIGRGQVSCSLQLLEAGASHKWVGCRPSAKVKEENLDVKDKSKMKGSHSVAGAEISTLKTSKAGKAFGNNVGPIPEAEGIQGSNNGNRKRKLKSSPFKISSKDEDNNDSRVNDNLKIKAADEAKSSVGKVKRSPHNAGPAKSGKISKPLDHHSSSSTDHKREDGDCALSTTQVLTNNQISLPTKLRSRRKMNLGKSQRDSKHADNTSIDQLNITTQSIDDRPHDLKERHSNCLSWHKLRRWCVFEWFYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYAELRAGTREGLPTDLARPLSVGQRVIAVHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMVIMFYFYGILFVLEIAVDLYNFIWAFSSKSAKDSQIKQRFKLHTMIMGIAICLPLVFFAADNNLSGFQILYLVMYVSVNCSLFMILFIFIFVSFTQDIECMPLNPVENMPANLSRHGVALDKIFGNLNEVKINGLLKEAKIEDYMKSTSNDKLDGTEGSVYISPSTHHINKLIKQAKSSHRHSRMQLEGSSLAELELFDKVFCYYSIMYNQRVVRGQVDLGCSNLQAKFGLSETVGIQQEASSQPSALAQIQAKEADVHALSELSRALDKKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVSSALYCLRQRNTYQGTSPLMFLKPVHDVGDPCSHSQEPGSHVAEIVGSSRAKAQTMIDEAMQAILALKKGESNLENIEEAIDFVSNRLSVDDLALPTVRSAAADTSNAAPVSQNHTSNPSTANYVVGPKSNGPSDKTEVEIPSELIAHCVATLLMIQRGSVILLLSIYWSSEFFLFWGGPGKISQLVAVNYELLRRLVILVLVLQILIVAKNMQKCTERQFPPSDVAQVLDSAVSSLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 1547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23036862 23056054 + Lsi05G015240.1 Lsi05g01524 664016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01524 1547 Gene3D - 2 102 - -
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 769 798 - -
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 679 712 - -
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 160 208 - -
Lsi05g01524 1547 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1055 1437 IPR028306 -
Lsi05g01524 1547 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1491 1547 IPR028306 -
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 160 179 - -
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 1 28 - -
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 190 208 - -
Lsi05g01524 1547 PANTHER LIN-9 623 964 IPR010561 GO:0006351|GO:0017053
Lsi05g01524 1547 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 159 484 IPR028306 -
Lsi05g01524 1547 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 623 964 IPR028306 -
Lsi05g01524 1547 Pfam Myb-like DNA-binding domain 49 84 IPR001005 -
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 647 747 - -
Lsi05g01524 1547 SMART sant 46 94 IPR001005 -
Lsi05g01524 1547 CDD SANT 50 84 IPR001005 -
Lsi05g01524 1547 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 4 128 IPR028306 -
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 728 747 - -
Lsi05g01524 1547 Coils Coil 882 902 - -
Lsi05g01524 1547 ProSiteProfiles SANT domain profile. 45 82 IPR017884 -
Lsi05g01524 1547 PANTHER LIN-9 4 128 IPR010561 GO:0006351|GO:0017053
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 248 268 - -
Lsi05g01524 1547 PANTHER LIN-9 159 484 IPR010561 GO:0006351|GO:0017053
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 283 302 - -
Lsi05g01524 1547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 84 IPR017930 -
Lsi05g01524 1547 SMART DIRP_2 830 931 IPR033471 -
Lsi05g01524 1547 Coils Coil 1346 1366 - -
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 1384 1414 - -
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 1384 1409 - -
Lsi05g01524 1547 SUPERFAMILY Homeodomain-like 45 92 IPR009057 -
Lsi05g01524 1547 Pfam DIRP 829 930 IPR033471 -
Lsi05g01524 1547 MobiDBLite consensus disorder prediction 283 299 - -
Lsi05g01524 1547 PANTHER LIN-9 1491 1547 IPR010561 GO:0006351|GO:0017053
Lsi05g01524 1547 PANTHER LIN-9 1055 1437 IPR010561 GO:0006351|GO:0017053
Lsi05g01524 1547 Coils Coil 1224 1247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01524 - - - bhj:120080265 672.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01524 Lsi-Chr5:23036862 Lsi11g00575 Lsi-Chr11:6091990 3.00E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25386 PF06584 DIRP 3.00E-30 No_clan Lsi TF