Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01536 ATGCTTCAAGAAGCTTCAACAAAACCTGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGGCAACATATATGAAATTCATGATGTTTCTGACAAGTTCGAGATCCAGCCTGGACTTCCAAGGATCAGCAGTTTCTCTTGCTTATCTGGTGCTGCCTTGAGTGCTAATGCCACCCTAGCAAACACAAATATATGCAATGGGTTGATAGGAGAAGAAATTCTGCCGACCTGGGACTCTCCTAACTCCTTCCGTAAGGTTCCCTCATCGCCTACTCTTTCAAGGTTGGATATATTGTCAACGTCTCTGCAGAGTAGTCTGTCAAACTTAAGTTGCAGTCCATCTACCCCAACCTCTGAATATGATTCATACTTGTTGAAGTCCATGAGTGCCCCATCCGGAAGTGAAGGTTTCCTTAATGTTAAGGAAGTGCAAGTGGCAGGTGGAGCTGCTGGTGAGGACAGGGTCCAAGCTGTCTGTTCTGAAGAAAATGGATGGCTATTTTGTGCAATTTATGATGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGCACATTGTATGAAACCATCGTATTTTATTTTAACCTACTAGATTGGGAAGCTAAGAATGAAACCTCCGACGGTTTGGACATGGAAAATTCACATCTTCTTGATGATAGTAGCATTGCTCAAGGAAGATTTTCTCCGTTGGGAAACAATAGTAAAATTGCTTCAGATATCCACAATGTATTAGAGAACCATTCATATGCCAAAGCAGGAATGACAAATTACCCTCTAAGGCATGGGGTGTTCGATAGCCTCCAGCGTGCTCTTAGTCAAACAGAGAATGATTTTCTGCACATGGTTGAACAGGAAATGGAGGATCGTCCTGATTTAGTTTCTGTTGGGTCATGCGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTGTACACGCTAAATTTGGGTGATAGTAGAGCAGTACTAGCCACCCTTGATGAGGGTGCTATGAGAGGGAATGGGGGACTGAAAGCTGTCCAGCTCACTGAGAGTCACACTGTGGATAATGAACTTGAAAGAGCACAGTTACAACATGATCATCCTGATGATCCGACAATCATTGTTGGTGGGAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCATTTGGAGTTGGCTACTTGAAGACGAAAAAATTTAATGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTAATAAGCCCTCCCTATATTTCCACTCAACCGGCATTGTCTATCCATAGGATATCAAAATCAGATTGCTTTGTTATAGTTGGAAGTGATGGTTTATTTGACTTTTTTGGCAATGAGGAGGCAGTGAACCTTGTCCATTCATATATCTTGAGCAACCCAACTGGTGATCCTGCAAAATTTTTACTGGAGCAGCTCCTGTTGAAAGCAGCTGATTGCGCAGGTTTTAGCAAGGAAGAATTAATTACCATTCCAGCCGGCAGGAGAAGGAAATATCATGATGATGTAACTGTTATTGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCTACTAGCATGTAA 1566 42.02 MLQEASTKPEGELEVSFGYKCNGNIYEIHDVSDKFEIQPGLPRISSFSCLSGAALSANATLANTNICNGLIGEEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSEYDSYLLKSMSAPSGSEGFLNVKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVFYFNLLDWEAKNETSDGLDMENSHLLDDSSIAQGRFSPLGNNSKIASDIHNVLENHSYAKAGMTNYPLRHGVFDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEGAMRGNGGLKAVQLTESHTVDNELERAQLQHDHPDDPTIIVGGKVKGKLKVTRAFGVGYLKTKKFNDALMGILRVRNLISPPYISTQPALSIHRISKSDCFVIVGSDGLFDFFGNEEAVNLVHSYILSNPTGDPAKFLLEQLLLKAADCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSM 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23151768 23157948 - Lsi05G015360.1 Lsi05g01536 664028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01536 521 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 3 520 - -
Lsi05g01536 521 CDD PP2Cc 152 508 IPR001932 -
Lsi05g01536 521 Gene3D - 119 517 IPR036457 -
Lsi05g01536 521 Pfam Protein phosphatase 2C 271 459 IPR001932 -
Lsi05g01536 521 SMART PP2C_4 130 506 IPR001932 -
Lsi05g01536 521 ProSiteProfiles PPM-type phosphatase domain profile. 139 508 IPR001932 -
Lsi05g01536 521 PANTHER PROTEIN PHOSPHATASE 2C 3 520 IPR015655 GO:0004722|GO:0006470
Lsi05g01536 521 SUPERFAMILY PP2C-like 153 509 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01536 Lsi-Chr5:23151768 Lsi07g01218 Lsi-Chr7:17726057 1.08E-14 dispersed
Lsi05g01536 Lsi-Chr5:23151768 Lsi01g01428 Lsi-Chr1:12411139 2.87E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01536 - - bhj:120073713 981.089