Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01558 ATGTCTGATGATGGAGGGAAGAACAAGAAAGCTGCTCTCATCGGCGTATCTTCCTTGTTTCTTGTTGCCATGGTAGTTGCAGTGGCAGTCGGCGTCAATCGCAAAGACTCCACTAACATCGGTGGCGGCGGTGGCGGCGGTGCCACGGCGGAGATCTCCACCTCCACCAAAGCCGTCAAGGCTCTCTGTCAGCCCACTGATTACCAAGAAACCTGCGAGAAAGCTCTGTCCCAGGCCGGAACCAACACGAGCGACCCACGTGAGCTAATCAAAGCCGGATTCCATGCCGCCGTAGACGAAATTAAATCGGCCCTCGGAAATTCCGCCACCTTGAAAGAATCCGCCACTGATCCCATGGCTAAACAAGCTCTTGACGCTTGTGGCGAGCTAATGGATTACGCAATTGACGATCTCTTAATTTCCTTTGACAGAATCACAGACAATTTCGACATCCAAAAAATCGATGATTACGTTGAGGATCTTAAGGTTTGGTTGAGTGGCGCATTGACTTATCAAGAAACTTGCATAGACGGCTTCGAAAATGTCACCGGCGATACAGGGGAAAAGATGAAGAATTTGTTGAAAATGTCAAAAGAAATGACAGCTAATGGGCTTGGAATGGTTAGTGAAGTTACTTCAATTATGACCTCTTTTGGGCTTCCATCGGCTGGACGACGGCTGTTGACGGAGGAATCCGATGAACAAGAGGAAGAACCATCGTGGGTTAGTGACAGACGTGGGCTACTCCAAGCCACCGGCGCCAGCATCAAGGCGGATGTTGTGGTGGCGAAAGACGGAAGTGGAAAGTACAAAACGGTGAGTGAAGCCTTAAATGATATCCCAAAGAAAAGCAATAAAACGTTTGTGATTTATGTTAAGGCCGGAGTTTATCAAGAACAAGTGATGATAGATAAAAGTATGACTTGGGTAATGATGATCGGAGATGGGCCGACTAAAACCAAAATCACCGCCGGCAAGAACTTCATTGACGGAACACCCACCTTCAAAACCGCTACCGTTTCGGTGATCGGAACCAACTTCATCGCGAAGGACCTGGGGTTCGAGAACTCTGCCGGACCAGAGAAGCACCAGGCAGTGGCGCTTCGAGTTCAATCTGACATGTCAATCTTCTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTACACTCACGCCCACCGTCAATTCTACCGAGATTGTACCATTACCGGCACCATCGATTTCATATTCGGCAACGGCGCCGTCGTCTTCCAGAACTGCAAGATACTTGTGAGGAAGCCAATGGCGAATCAACAATGCATCGTCACAGCTCAGGGCCGAACTCAACGGAAGGAGCCCACCGCCATAATCTTGCAGAATTGCGTCATTTCTTCTGACCCTGGCTTCTTCCCCGTCCGCCACATCCACAAAGCCTACCTCGGCCGTCCATGGAAACAATATTCAAGAACCATCATCATGCAGTCCCAAATCGATGATTTAATTCAACCTGAAGGGTGGCTCCCATGGATGGGCGATTTCGCTCTCAATACTCTGTTTTACACAGAGTACAATAACAGGGGACCTGGCGCCGCCAAGGATAAACGGATTAAGTGGAGGGGAATTAAGGAGATCACACCGAAGCACGCCATTGATTTCACCGCTGGGAGATTTATTCGCGGTGATCCGTGGATCAAGCCCACCGGTGTCCCGTACACTTCCGGCATGATGGCAGTATAA 1719 49.39 MSDDGGKNKKAALIGVSSLFLVAMVVAVAVGVNRKDSTNIGGGGGGGATAEISTSTKAVKALCQPTDYQETCEKALSQAGTNTSDPRELIKAGFHAAVDEIKSALGNSATLKESATDPMAKQALDACGELMDYAIDDLLISFDRITDNFDIQKIDDYVEDLKVWLSGALTYQETCIDGFENVTGDTGEKMKNLLKMSKEMTANGLGMVSEVTSIMTSFGLPSAGRRLLTEESDEQEEEPSWVSDRRGLLQATGASIKADVVVAKDGSGKYKTVSEALNDIPKKSNKTFVIYVKAGVYQEQVMIDKSMTWVMMIGDGPTKTKITAGKNFIDGTPTFKTATVSVIGTNFIAKDLGFENSAGPEKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNGAVVFQNCKILVRKPMANQQCIVTAQGRTQRKEPTAIILQNCVISSDPGFFPVRHIHKAYLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWMGDFALNTLFYTEYNNRGPGAAKDKRIKWRGIKEITPKHAIDFTAGRFIRGDPWIKPTGVPYTSGMMAV 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23346044 23348212 - Lsi05G015580.1 Lsi05g01558 664050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01558 572 Pfam Plant invertase/pectin methylesterase inhibitor 58 202 IPR006501 GO:0004857
Lsi05g01558 572 PANTHER PECTINESTERASE 12 570 - -
Lsi05g01558 572 Pfam Pectinesterase 259 555 IPR000070 GO:0030599|GO:0042545
Lsi05g01558 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 211 IPR035513 -
Lsi05g01558 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 211 IPR035513 -
Lsi05g01558 572 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Lsi05g01558 572 CDD PMEI-like_3 61 213 - -
Lsi05g01558 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 206 IPR006501 GO:0004857
Lsi05g01558 572 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Lsi05g01558 572 SMART PMEI_2 54 207 IPR006501 GO:0004857
Lsi05g01558 572 PANTHER PECTINESTERASE 12 570 - -
Lsi05g01558 572 SUPERFAMILY Pectin lyase-like 256 568 IPR011050 -
Lsi05g01558 572 Gene3D - 253 569 IPR012334 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01558 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101212686 992.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01558 Lsi09g01450 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01558 Lsi-Chr5:23346044 Lsi11g00122 Lsi-Chr11:1390273 1.98E-170 dispersed
Lsi02g02500 Lsi-Chr2:31480217 Lsi05g01558 Lsi-Chr5:23346044 5.23E-10 transposed
Lsi05g01558 Lsi-Chr5:23346044 Lsi06g00089 Lsi-Chr6:897490 1.80E-116 wgd
Lsi05g01558 Lsi-Chr5:23346044 Lsi09g01450 Lsi-Chr9:22477690 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g259 . . . . . . . . Cmo08g01213 Cmo17g00328 Cma06g01533 . . . Sed02g1163 . . Bhi01g01041 Tan10g1033 Cmetu06g0197 Lac11g0857 Hepe05g1419 . Lcy11g1391 Cla06g00463 Cam06g0495 Cec06g0498 Cco06g0497 Clacu06g0481 Cmu06g0482 Cre06g1255 Cone14ag0748 Cone15ag0754 . Cone4ag0137 Lsi05g01558 . Chy11g01528 Cme06g00752 . . . . Bpe05g00827 . . . . Cmo06g01513 . Cma08g01239 Cma17g00341 . . . . . . . . . . . Cla05g00670 Cam05g0734 Cec05g0742 Cco05g0741 Clacu05g0727 Cmu05g0692 Cre05g0766 Lsi09g01450 Csa03g01487 Chy06g00724 Cme11g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000192 6 4 7 5 3 4 2 4 4 4 4 4 18 4 4 18 4 8 1 4 4 5 16 7 9 3 8 10 5 3 182