Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01569 ATGTCTACAGCCAGTTCCAGCTCTGTAAGGAAAGCTGGTGAAGCTGTTCCCGACCAGTTTCCGGCCGGCCTTCGTGTTCTGGTTGTGGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGAAGTAACAAATTGTAGTCGAGCTGAAGATGCGCTGTCTCTTCTCAGACAGTACAAAAACGGGTTCGATATCGTTTTGAGTGATGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGACGGGAAAAACGTGGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCATGTTGTTCGCAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGATGTGTGGACGATGTAGATCGGCAGCAAAAAACTAATGAAGATGCCGATTATTCATCATCTGCTAATGAAGGGAGTTGGAGGAACTCAAAGAGGAGGAAGGATGACGTAGAAGATCCCGAGGAGAGGGATGATTCATCGACCCTAAAGAAACCAAGGGTCGTTTGGTCTGTTGAGCTGCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAATGTTGCCAGCCACCTTCAGAAATATCGCTTGTACCTGAGAAGATTAAGTGGAATCACACAACACCAGAGTAATTTAAACAACACATTCATGAGTGCTCAAGATGCATTTGGCCCGTCACTGAACGGCCTTGATCTTCAAACTCTTGCTGCTGCTGGTCAACTCCAGCCACAAAGTCTTGCTACACTTCAAGCATCTGGATTTGGTAGGTCTACAGCAAAATCCGGCATGCCTATGCCTCTTGTCGATCAGAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTAAGATTCGGTGATGGGCAGCAGCCACACTTGAATGGTAATAAACCAATGAATCTACTTCATGGAATTCCAACAACTATGGAGCCAAAACAACTTGCTAATCTGCAGCATTCTGCACAATCGCATGGGAACATGACAATGCAAGTTAGTGCCCAAGGAAGCCAATCTAGCTCTCAACTAATGCAGACACCTCAACAACAAGCTCGAGCGCAGATCCTTAACGAAAGTACCTCAACTAGCGTAACAAGGCTTCCACCAACAATGCAGCAGTCAATTTTGCCAAATGGAACTACTAATGCAGTTTTGGCAAGGAATGAATTTGCCAATAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCAGCATCAACAATGTTAAATTTTCCCTTGAACCAAACTGCAGAATTGCCTGGTAATAGTTTCCCTCTTCAAAGTACCCCGGGAATGTCAAGCATTGTACCAAAGGGAAGATTCCCAGACGAGGTTAACTCGGACATTAAAGGATCTGAAGGTTTTGTGCCAAGCTATGATATGTTTAGGGATCTCCATCCTCAGAAACCCCATGATTGGGACTTGCAGCACGTTGGCGTGACCTTCGATACATCTCAAGGTAGTCTTGACGTTCCACCCTCTGCTTTTGCTCACCAAGGGTATGCCCCTAGCCAACAAAATGGACAAAACAGGAACGCATCTATCGCAGGCAAGGCCATGTTCTTGTTGGAAGAAGGAAGTGACAATGGGAATGCACAAAGTATGGGCCAACAACTCAACCCTCTTTTTGTTGATGGTTCGGTGAGAGTTAAAGCTGAAAGAGCTCCTGATACTAGCAGTCAAACAGACCTTTTCTCTGAACATTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGGTTAGATTGCGGTACCCTCTTTCCCTCCCCCAGCATTCTTACGATGGAACTCGAGTGTGTCCATTGCTTAGGTTTGGTAAGAACAACGTGAACCGGCATAACATTGCTGATTCTTTCGACCGCTTCCTCAGAGAGACTAACTCGAGTCTAGTTGTGGAACTGGCCATTACTGCGGTGCTCTTGACGCATGGAATCGAGATTTTTGACGCAATTGCAGGTTTTAGGAACCCCCTTTATGACTCCAATAACCTACTGAAATAA 2178 45.09 MSTASSSSVRKAGEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTNCSRAEDALSLLRQYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGCVDDVDRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDPEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGITQHQSNLNNTFMSAQDAFGPSLNGLDLQTLAAAGQLQPQSLATLQASGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGNKPMNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGSQSSSQLMQTPQQQARAQILNESTSTSVTRLPPTMQQSILPNGTTNAVLARNEFANNSRGGGYNLVSPASTMLNFPLNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVNSDIKGSEGFVPSYDMFRDLHPQKPHDWDLQHVGVTFDTSQGSLDVPPSAFAHQGYAPSQQNGQNRNASIAGKAMFLLEEGSDNGNAQSMGQQLNPLFVDGSVRVKAERAPDTSSQTDLFSEHFGQEDLMSALLKQVRLRYPLSLPQHSYDGTRVCPLLRFGKNNVNRHNIADSFDRFLRETNSSLVVELAITAVLLTHGIEIFDAIAGFRNPLYDSNNLLK 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23459437 23463386 + Lsi05G015690.1 Lsi05g01569 664061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01569 725 MobiDBLite consensus disorder prediction 158 202 - -
Lsi05g01569 725 SUPERFAMILY CheY-like 23 147 IPR011006 -
Lsi05g01569 725 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
Lsi05g01569 725 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 635 IPR045279 GO:0009736
Lsi05g01569 725 Gene3D - 201 263 - -
Lsi05g01569 725 Gene3D - 24 156 - -
Lsi05g01569 725 SMART REC_2 24 136 IPR001789 GO:0000160
Lsi05g01569 725 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Lsi05g01569 725 MobiDBLite consensus disorder prediction 180 202 - -
Lsi05g01569 725 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Lsi05g01569 725 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Lsi05g01569 725 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Lsi05g01569 725 CDD REC_typeB_ARR-like 26 140 - -
Lsi05g01569 725 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 635 - -
Lsi05g01569 725 PIRSF RR_ARR_type-B 5 645 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lsi05g01569 725 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02442 Lsi-Chr2:30976882 Lsi05g01569 Lsi-Chr5:23459437 2.86E-10 dispersed
Lsi02g02444 Lsi-Chr2:30989542 Lsi05g01569 Lsi-Chr5:23459437 2.70E-13 dispersed
Lsi05g01264 Lsi-Chr5:20404899 Lsi05g01569 Lsi-Chr5:23459437 1.73E-45 dispersed
Lsi05g01569 Lsi-Chr5:23459437 Lsi11g00368 Lsi-Chr11:3798647 3.52E-86 dispersed
Lsi09g00629 Lsi-Chr9:6912306 Lsi05g01569 Lsi-Chr5:23459437 1.26E-17 dispersed
Lsi10g01395 Lsi-Chr10:18089773 Lsi05g01569 Lsi-Chr5:23459437 9.67E-22 dispersed
Lsi01g01374 Lsi-Chr1:11925848 Lsi05g01569 Lsi-Chr5:23459437 1.18E-14 transposed
Lsi02g00088 Lsi-Chr2:735922 Lsi05g01569 Lsi-Chr5:23459437 1.82E-18 transposed
Lsi08g01621 Lsi-Chr8:24136876 Lsi05g01569 Lsi-Chr5:23459437 4.78E-97 transposed
Lsi05g01569 Lsi-Chr5:23459437 Lsi09g01466 Lsi-Chr9:22652653 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25389 PF00072 Response_reg 1.70E-22 CL0304 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01569 - K14491 csv:101209013 1208.36