Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01569 ATGTCTACAGCCAGTTCCAGCTCTGTAAGGAAAGCTGGTGAAGCTGTTCCCGACCAGTTTCCGGCCGGCCTTCGTGTTCTGGTTGTGGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGAAGTAACAAATTGTAGTCGAGCTGAAGATGCGCTGTCTCTTCTCAGACAGTACAAAAACGGGTTCGATATCGTTTTGAGTGATGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGACGGGAAAAACGTGGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCATGTTGTTCGCAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGATGTGTGGACGATGTAGATCGGCAGCAAAAAACTAATGAAGATGCCGATTATTCATCATCTGCTAATGAAGGGAGTTGGAGGAACTCAAAGAGGAGGAAGGATGACGTAGAAGATCCCGAGGAGAGGGATGATTCATCGACCCTAAAGAAACCAAGGGTCGTTTGGTCTGTTGAGCTGCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAATGTTGCCAGCCACCTTCAGAAATATCGCTTGTACCTGAGAAGATTAAGTGGAATCACACAACACCAGAGTAATTTAAACAACACATTCATGAGTGCTCAAGATGCATTTGGCCCGTCACTGAACGGCCTTGATCTTCAAACTCTTGCTGCTGCTGGTCAACTCCAGCCACAAAGTCTTGCTACACTTCAAGCATCTGGATTTGGTAGGTCTACAGCAAAATCCGGCATGCCTATGCCTCTTGTCGATCAGAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTAAGATTCGGTGATGGGCAGCAGCCACACTTGAATGGTAATAAACCAATGAATCTACTTCATGGAATTCCAACAACTATGGAGCCAAAACAACTTGCTAATCTGCAGCATTCTGCACAATCGCATGGGAACATGACAATGCAAGTTAGTGCCCAAGGAAGCCAATCTAGCTCTCAACTAATGCAGACACCTCAACAACAAGCTCGAGCGCAGATCCTTAACGAAAGTACCTCAACTAGCGTAACAAGGCTTCCACCAACAATGCAGCAGTCAATTTTGCCAAATGGAACTACTAATGCAGTTTTGGCAAGGAATGAATTTGCCAATAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCAGCATCAACAATGTTAAATTTTCCCTTGAACCAAACTGCAGAATTGCCTGGTAATAGTTTCCCTCTTCAAAGTACCCCGGGAATGTCAAGCATTGTACCAAAGGGAAGATTCCCAGACGAGGTTAACTCGGACATTAAAGGATCTGAAGGTTTTGTGCCAAGCTATGATATGTTTAGGGATCTCCATCCTCAGAAACCCCATGATTGGGACTTGCAGCACGTTGGCGTGACCTTCGATACATCTCAAGGTAGTCTTGACGTTCCACCCTCTGCTTTTGCTCACCAAGGGTATGCCCCTAGCCAACAAAATGGACAAAACAGGAACGCATCTATCGCAGGCAAGGCCATGTTCTTGTTGGAAGAAGGAAGTGACAATGGGAATGCACAAAGTATGGGCCAACAACTCAACCCTCTTTTTGTTGATGGTTCGGTGAGAGTTAAAGCTGAAAGAGCTCCTGATACTAGCAGTCAAACAGACCTTTTCTCTGAACATTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGGTTAGATTGCGGTACCCTCTTTCCCTCCCCCAGCATTCTTACGATGGAACTCGAGTGTGTCCATTGCTTAGGTTTGGTAAGAACAACGTGAACCGGCATAACATTGCTGATTCTTTCGACCGCTTCCTCAGAGAGACTAACTCGAGTCTAGTTGTGGAACTGGCCATTACTGCGGTGCTCTTGACGCATGGAATCGAGATTTTTGACGCAATTGCAGGTTTTAGGAACCCCCTTTATGACTCCAATAACCTACTGAAATAA 2178 45.09 MSTASSSSVRKAGEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTNCSRAEDALSLLRQYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGCVDDVDRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDPEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGITQHQSNLNNTFMSAQDAFGPSLNGLDLQTLAAAGQLQPQSLATLQASGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGNKPMNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGSQSSSQLMQTPQQQARAQILNESTSTSVTRLPPTMQQSILPNGTTNAVLARNEFANNSRGGGYNLVSPASTMLNFPLNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVNSDIKGSEGFVPSYDMFRDLHPQKPHDWDLQHVGVTFDTSQGSLDVPPSAFAHQGYAPSQQNGQNRNASIAGKAMFLLEEGSDNGNAQSMGQQLNPLFVDGSVRVKAERAPDTSSQTDLFSEHFGQEDLMSALLKQVRLRYPLSLPQHSYDGTRVCPLLRFGKNNVNRHNIADSFDRFLRETNSSLVVELAITAVLLTHGIEIFDAIAGFRNPLYDSNNLLK 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23459437 23463386 + Lsi05G015690.1 Lsi05g01569 664061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01569 725 MobiDBLite consensus disorder prediction 158 202 - -
Lsi05g01569 725 SUPERFAMILY CheY-like 23 147 IPR011006 -
Lsi05g01569 725 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
Lsi05g01569 725 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 635 IPR045279 GO:0009736
Lsi05g01569 725 Gene3D - 201 263 - -
Lsi05g01569 725 Gene3D - 24 156 - -
Lsi05g01569 725 SMART REC_2 24 136 IPR001789 GO:0000160
Lsi05g01569 725 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Lsi05g01569 725 MobiDBLite consensus disorder prediction 180 202 - -
Lsi05g01569 725 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Lsi05g01569 725 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Lsi05g01569 725 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Lsi05g01569 725 CDD REC_typeB_ARR-like 26 140 - -
Lsi05g01569 725 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 635 - -
Lsi05g01569 725 PIRSF RR_ARR_type-B 5 645 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lsi05g01569 725 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01569 - - K14491 csv:101209013 1208.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02442 Lsi-Chr2:30976882 Lsi05g01569 Lsi-Chr5:23459437 2.86E-10 dispersed
Lsi02g02444 Lsi-Chr2:30989542 Lsi05g01569 Lsi-Chr5:23459437 2.70E-13 dispersed
Lsi05g01264 Lsi-Chr5:20404899 Lsi05g01569 Lsi-Chr5:23459437 1.73E-45 dispersed
Lsi05g01569 Lsi-Chr5:23459437 Lsi11g00368 Lsi-Chr11:3798647 3.52E-86 dispersed
Lsi09g00629 Lsi-Chr9:6912306 Lsi05g01569 Lsi-Chr5:23459437 1.26E-17 dispersed
Lsi10g01395 Lsi-Chr10:18089773 Lsi05g01569 Lsi-Chr5:23459437 9.67E-22 dispersed
Lsi01g01374 Lsi-Chr1:11925848 Lsi05g01569 Lsi-Chr5:23459437 1.18E-14 transposed
Lsi02g00088 Lsi-Chr2:735922 Lsi05g01569 Lsi-Chr5:23459437 1.82E-18 transposed
Lsi08g01621 Lsi-Chr8:24136876 Lsi05g01569 Lsi-Chr5:23459437 4.78E-97 transposed
Lsi05g01569 Lsi-Chr5:23459437 Lsi09g01466 Lsi-Chr9:22652653 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01621 . 52 256 Response Regulator Gene Family AT3G16857 53.8 1.7e-54 211.1
Lsi09g01466 . 37 292 Response Regulator Gene Family AT4G31920 55.9 4.6e-72 269.2
Lsi05g01569 . 16 271 Response Regulator Gene Family AT4G31920 53.7 2.8e-69 260.0
Lsi08g01621 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.6e-62 235.7
Lsi04g02085 . 93 255 Response Regulator Gene Family AT1G67710 55.0 9.8e-41 164.9
Lsi05g01569 . 99 262 Response Regulator Gene Family AT1G67710 54.7 6.4e-40 162.2
Lsi11g00368 . 15 348 Response Regulator Gene Family AT2G25180 54.4 2.2e-80 297.0
Lsi05g01569 . 18 291 Response Regulator Gene Family AT2G25180 55.6 3.9e-77 286.2
Lsi08g01621 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Lsi09g01466 . 100 333 Response Regulator Gene Family AT2G01760 51.4 7.2e-54 208.0
Lsi08g01621 . 72 259 Response Regulator Gene Family AT2G01760 51.0 1.6e-48 190.3
Lsi08g01621 . 9 258 Response Regulator Gene Family AT5G58080 51.0 1.3e-62 238.0
Lsi09g01466 . 38 263 Response Regulator Gene Family AT4G16110 67.1 9.3e-80 295.0
Lsi05g01569 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Lsi04g02085 . 12 233 Response Regulator Gene Family AT4G16110 59.7 6.7e-62 235.7
Lsi08g01621 . 10 235 Response Regulator Gene Family AT4G16110 54.5 5.3e-59 226.1
Lsi11g00368 . 18 251 Response Regulator Gene Family AT4G16110 55.0 1.8e-51 201.1
Lsi06g01039 . 17 235 Response Regulator Gene Family AT4G16110 52.0 2.7e-47 187.2
Lsi06g01513 . 21 188 Response Regulator Gene Family AT3G48100 68.2 1.4e-54 209.5
Lsi04g00507 . 29 162 Response Regulator Gene Family AT3G48100 73.1 1.9e-51 199.1
Lsi09g00795 . 11 151 Response Regulator Gene Family AT3G48100 58.9 7.7e-40 160.6
Lsi03g01597 CCT 3 156 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Lsi04g00507 . 1 189 Response Regulator Gene Family AT1G59940 61.7 7.8e-56 214.5
Lsi06g01513 . 8 179 Response Regulator Gene Family AT1G59940 60.5 1.0e-47 187.6
Lsi03g01597 CCT 8 154 Response Regulator Gene Family AT1G59940 57.1 4.6e-40 162.2
Lsi09g00795 . 5 152 Response Regulator Gene Family AT1G59940 58.1 6.0e-40 161.8
Lsi04g01015 . 18 150 Response Regulator Gene Family AT1G59940 61.7 3.3e-38 156.0
Lsi04g00507 . 16 185 Response Regulator Gene Family AT1G10470 66.5 3.3e-54 208.8
Lsi06g01513 . 25 172 Response Regulator Gene Family AT1G10470 64.9 7.3e-46 181.0
Lsi03g01597 CCT 10 154 Response Regulator Gene Family AT1G10470 57.9 6.0e-40 161.4
Lsi09g00795 . 11 157 Response Regulator Gene Family AT1G10470 59.2 2.3e-39 159.5
Lsi04g01015 . 20 150 Response Regulator Gene Family AT1G10470 61.1 1.6e-37 153.3
Lsi06g01513 . 21 188 Response Regulator Gene Family AT3G48100 68.2 1.4e-54 209.5
Lsi04g00507 . 29 162 Response Regulator Gene Family AT3G48100 73.1 1.9e-51 199.1
Lsi09g00795 . 11 151 Response Regulator Gene Family AT3G48100 58.9 7.7e-40 160.6
Lsi03g01597 CCT 3 156 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Lsi04g00507 . 11 175 Response Regulator Gene Family AT5G62920 64.2 3.7e-50 194.9
Lsi06g01513 . 22 168 Response Regulator Gene Family AT5G62920 71.4 1.1e-49 193.4
Lsi09g00795 . 11 151 Response Regulator Gene Family AT5G62920 58.9 5.9e-40 161.0
Lsi03g01597 CCT 10 156 Response Regulator Gene Family AT5G62920 55.1 2.3e-39 159.1
Lsi06g01513 . 30 167 Response Regulator Gene Family AT1G19050 73.9 2.4e-50 195.7
Lsi04g00507 . 28 185 Response Regulator Gene Family AT1G19050 59.7 8.9e-45 177.2
Lsi03g01597 CCT 8 159 Response Regulator Gene Family AT1G19050 52.6 2.1e-38 156.0
Lsi09g00795 . 3 154 Response Regulator Gene Family AT1G19050 53.3 4.7e-38 154.8
Lsi04g01015 . 20 151 Response Regulator Gene Family AT1G19050 60.6 2.3e-37 152.5
Lsi03g01597 CCT 1 160 Response Regulator Gene Family AT2G41310 72.5 2.0e-58 222.6
Lsi09g00795 . 1 153 Response Regulator Gene Family AT2G41310 64.9 2.9e-49 192.2
Lsi04g00507 . 25 158 Response Regulator Gene Family AT2G41310 58.9 3.4e-42 168.7
Lsi06g01513 . 30 164 Response Regulator Gene Family AT2G41310 61.7 2.9e-41 165.6
Lsi04g01015 . 20 151 Response Regulator Gene Family AT2G41310 55.9 1.2e-39 160.2
Lsi03g01597 CCT 1 158 Response Regulator Gene Family AT3G57040 77.8 4.5e-61 231.5
Lsi09g00795 . 8 153 Response Regulator Gene Family AT3G57040 67.8 1.6e-50 196.4
Lsi04g00507 . 25 158 Response Regulator Gene Family AT3G57040 60.1 5.0e-44 174.9
Lsi06g01513 . 29 164 Response Regulator Gene Family AT3G57040 61.1 1.8e-41 166.4
Lsi04g01015 . 18 151 Response Regulator Gene Family AT3G57040 56.4 6.3e-39 157.9
Lsi06g01513 . 17 187 Response Regulator Gene Family AT1G74890 68.0 2.1e-54 209.1
Lsi04g00507 . 25 184 Response Regulator Gene Family AT1G74890 60.5 7.2e-47 184.1
Lsi09g00795 . 11 146 Response Regulator Gene Family AT1G74890 60.3 7.3e-39 157.5
Lsi03g01597 CCT 8 154 Response Regulator Gene Family AT1G74890 54.4 1.2e-38 156.8
Lsi04g01015 . 12 147 Response Regulator Gene Family AT1G74890 58.1 4.0e-37 151.8
Lsi04g01015 . 20 152 Response Regulator Gene Family AT2G40670 70.1 2.6e-47 185.3
Lsi03g01597 CCT 6 156 Response Regulator Gene Family AT2G40670 55.3 2.4e-40 162.2
Lsi04g00507 . 26 159 Response Regulator Gene Family AT2G40670 56.2 1.2e-39 159.8
Lsi06g01513 . 33 165 Response Regulator Gene Family AT2G40670 60.3 6.4e-38 154.1
Lsi04g01015 . 20 152 Response Regulator Gene Family AT3G56380 71.6 1.3e-48 189.5
Lsi06g01513 . 18 165 Response Regulator Gene Family AT3G56380 57.0 2.2e-40 162.2
Lsi04g00507 . 26 159 Response Regulator Gene Family AT3G56380 54.1 4.9e-40 161.0
Lsi03g01597 CCT 6 156 Response Regulator Gene Family AT3G56380 53.9 1.9e-39 159.1
Lsi09g00795 . 11 154 Response Regulator Gene Family AT3G56380 55.2 3.0e-37 151.8
Lsi08g01621 . 52 256 Response Regulator Gene Family AT3G16857 53.8 1.7e-54 211.1
Lsi09g01466 . 38 263 Response Regulator Gene Family AT4G16110 67.1 9.3e-80 295.0
Lsi05g01569 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Lsi04g02085 . 12 233 Response Regulator Gene Family AT4G16110 59.7 6.7e-62 235.7
Lsi08g01621 . 10 235 Response Regulator Gene Family AT4G16110 54.5 5.3e-59 226.1
Lsi11g00368 . 18 251 Response Regulator Gene Family AT4G16110 55.0 1.8e-51 201.1
Lsi06g01039 . 17 235 Response Regulator Gene Family AT4G16110 52.0 2.7e-47 187.2
Lsi09g01466 . 37 292 Response Regulator Gene Family AT4G31920 55.9 4.6e-72 269.2
Lsi05g01569 . 16 271 Response Regulator Gene Family AT4G31920 53.7 2.8e-69 260.0
Lsi08g01621 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.6e-62 235.7
Lsi04g02085 . 93 255 Response Regulator Gene Family AT1G67710 55.0 9.8e-41 164.9
Lsi05g01569 . 99 262 Response Regulator Gene Family AT1G67710 54.7 6.4e-40 162.2
Lsi11g00368 . 15 348 Response Regulator Gene Family AT2G25180 54.4 2.2e-80 297.0
Lsi05g01569 . 18 291 Response Regulator Gene Family AT2G25180 55.6 3.9e-77 286.2
Lsi08g01621 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Lsi09g01466 . 100 333 Response Regulator Gene Family AT2G01760 51.4 7.2e-54 208.0
Lsi08g01621 . 72 259 Response Regulator Gene Family AT2G01760 51.0 1.6e-48 190.3
Lsi08g01621 . 9 258 Response Regulator Gene Family AT5G58080 51.0 1.3e-62 238.0
Lsi01g01374 . 38 185 Response Regulator Gene Family AT5G60100 60.9 6.4e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001295 2 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25389 PF00072 Response_reg 1.70E-22 CL0304 Lsi TF