Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01571 ATGATTTTCAATTTTCACATACAACGTGCTTTGAATTTTCTCTCCACCATTTCTTGCGCTGTTTATCACTTTCTCTCTCAATCTACGCGTTTTCTCTCTCTAAATTCCACTCTATTTCCTTCCAAATTTTCAAACCCACTAACCCCCAAATCCCCTAAATCCATGGCCTTCGCCGATCTGCTCCTCTTCCTCATCTTTACCGCCATACCCTTTTCGATTTCTCAGCCAACTGACCAAGCTCCACCTCCGGCCGCCGGTTCCTGCAATGGCATCTTCTTGTCCTACACTTTCGATCAAGGAGCCAAGCTTCCCCCAAATCTCACTGATCTGCCCCGCCAGCCCTACCGATTCGAGTCCACTCTCTCCATTCTCAACAACGGCCTTAACGAGCTCAAGTCTTGGATGGTTTTTGTGGGGTTTCAACACAATGAGTTCTTGGTCTCGGCCTCCGGCGCTGTCCTCGCTGATGGTAATTCCTTCCCTGGTAACGTTGGTAATGGGACTATTTTCGCTGGTTTTCCGATGACCGACTTGAAGACGGCCATTGAAACTGCTGGGGACATCACTCAGATGCAAGTCCAAGTCAAGTTACTTGGGACCCAATTTGGGGTTGCCCCTCCGAAGAGTCCGATGCCTTCGAATATATCTCTTGCCAATGATGGATATCTCTGCCCCAAGCCGACTCTACAAGGAAAGAGTGAGATGCACGTCTGTTGCACACCCGATCCAAGCGTGAAAAAAAATATCACAACCAGTGAAGAGTTCTTGCCTCGTCAAACTGGTGATCTAACGATCATGTATGATGTGACAAGGACTTATGATTCAAGTTACTGGGCACAAGTTACAATTTCTAACCACAATCCTCTTGGTCGTCTTGACTATTGGAAATTGAGCTGGGATTGGATGAGGGATGAGTTTATCTATTCGATGAAAGGGGCTTATCCTTCGGTTGTTGATTCTACTGACTGCATTTTTGGTAGACAAGGCACTTATTATCGGGAGTTAGACTTTTCCAATGTATTAAGTTGTGAAAAAAGGCCAACAATTGTTGATTTACCTCCAACTAAGGCCAACGACACCACTCTCGGGTTGATCCCTTTCTGCTGTCGAAATGGGACAATCTTGCCATCTCATATGGACCCGACTAAGTCGATTTCTGCATTTCAGATGCAAGTGTTTAAAATGCCACCGGATCTTAATAGATCCCAGATTACACCACCTCAGAATTGGCAGATCAGTGGCATTCTCAACCCCACATATAAATGTGGCCAGCCAGTGAGGGTAAGTCCTAGCGAATTCCCCGACTCTAGCGGTTTACCATTGAATTCGACTGCAGTAGCCAGCTGGCAGGTTGTTTGCAATATAACACATGCCAAGGATGACACCCCGAAGTGCTGTGTTTCGTTTTCATCTTACTACAATGATTCTGTCATCCCGTGTAGAACGTGTGCTTGTGGATGCTCGCAAAACTCAGCCCGTACATGTAGTGCAACCTCCCCTGCGATGCTCCTCCCACCTGAAGCCCTTCTTGTTCCTTTTGAGAATAGGACCGCCATGGCTGTTGCTTGGGCTGATCTTAAACATTTCCCAGCTCCTAATCCGATGCCTTGTGCGGATAACTGCGGTGTCAGTATCAATTGGCATTTATATACTGATTATAGAGACGGATGGAGTGCGAGGATCACTCTCTTCAACTGGGACGAAGTGAATTTTGCAGATTGGTTTGCTGCAGTTCAGATGAACAAAGCAGCACCTGGTTTCCAGGCAATGTACTCGTTCAATGCAACCACCTTGGAATTGGATGGTTCGAACAATACTATCTTTATGCAGGGTAATCCTGGACTAAACTATCTCGTGGGAGAAACAGACGGGGCGAACCCAGCAAAGGATCCACGGGTACCTGGAAAACAGCAATCTGTGATCTCATTTACAAAGAAGAACATACAAGGTCTTAACATGGCTGCTGGAGATGGGTTCCCCACAAAAGTGTTCTTCAATGGGGAGGAATGCTTGGTTCCAAAAATGTTCCCAGCCAACAACAGCCGAAGAAACTTAGCTTCGTTCATTCCGAGCATCCTAATGCTACTACTCGTGTTCATGTTCATTCAGCAATAG 2115 46.34 MIFNFHIQRALNFLSTISCAVYHFLSQSTRFLSLNSTLFPSKFSNPLTPKSPKSMAFADLLLFLIFTAIPFSISQPTDQAPPPAAGSCNGIFLSYTFDQGAKLPPNLTDLPRQPYRFESTLSILNNGLNELKSWMVFVGFQHNEFLVSASGAVLADGNSFPGNVGNGTIFAGFPMTDLKTAIETAGDITQMQVQVKLLGTQFGVAPPKSPMPSNISLANDGYLCPKPTLQGKSEMHVCCTPDPSVKKNITTSEEFLPRQTGDLTIMYDVTRTYDSSYWAQVTISNHNPLGRLDYWKLSWDWMRDEFIYSMKGAYPSVVDSTDCIFGRQGTYYRELDFSNVLSCEKRPTIVDLPPTKANDTTLGLIPFCCRNGTILPSHMDPTKSISAFQMQVFKMPPDLNRSQITPPQNWQISGILNPTYKCGQPVRVSPSEFPDSSGLPLNSTAVASWQVVCNITHAKDDTPKCCVSFSSYYNDSVIPCRTCACGCSQNSARTCSATSPAMLLPPEALLVPFENRTAMAVAWADLKHFPAPNPMPCADNCGVSINWHLYTDYRDGWSARITLFNWDEVNFADWFAAVQMNKAAPGFQAMYSFNATTLELDGSNNTIFMQGNPGLNYLVGETDGANPAKDPRVPGKQQSVISFTKKNIQGLNMAAGDGFPTKVFFNGEECLVPKMFPANNSRRNLASFIPSILMLLLVFMFIQQ 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23465913 23468672 - Lsi05G015710.1 Lsi05g01571 664063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01571 704 Pfam COBRA-like protein 277 456 IPR006918 GO:0010215|GO:0031225
Lsi05g01571 704 PANTHER COBRA-LIKE PROTEIN 7 61 702 - -
Lsi05g01571 704 PANTHER COBRA-LIKE PROTEIN 7 61 702 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01234 Lsi-Chr4:19156171 Lsi05g01571 Lsi-Chr5:23465913 0 dispersed
Lsi05g01571 Lsi-Chr5:23465913 Lsi06g01402 Lsi-Chr6:24572437 9.95E-41 dispersed
Lsi05g01571 Lsi-Chr5:23465913 Lsi05g00621 Lsi-Chr5:7649343 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01571 - - csv:101209258 1269.22