Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01573 ATGATGATGGATCCGAGTGACAGAGGATCGGAATCAGAGGACATGTCCGGTAAGAACTCCAGTGGGGTTTCGTCGGAGGAGAGTCAAGTGAATGAGCAGAACAAGAAGACTTGTGCTGACTGTGGTACTTCGAAAACCCCTTTATGGAGAGGCGGTCCGGCTGGTCCAAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGTAGGAAGAAGAGGAGAGCGATTTTGGGGTTGAGCAAAGGGGTTGTAGAAGATAAGAAGAGCAAAAAGAACAGTAATATTAGCAATAGTAAGTTGAGAGATAGTTTGAAACAAAGGCTTTTGGCTTTGGGTAGAGAAGTTTTGATGCAGAGATCTACTGTTGAGAGGCAAAGGAAGAAGTTAGGAGAAGAAGAACAAGCTGCTGTGCTTTTGATGGCTTTATCCTATGGCTCTGTTTATGCTTGA 444 44.82 MMMDPSDRGSESEDMSGKNSSGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDKKSKKNSNISNSKLRDSLKQRLLALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23500178 23501788 - Lsi05G015730.1 Lsi05g01573 664065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01573 147 ProSiteProfiles GATA-type zinc finger domain profile. 32 68 IPR000679 GO:0006355|GO:0043565
Lsi05g01573 147 PANTHER OS01G0976800 PROTEIN 2 147 - -
Lsi05g01573 147 CDD ZnF_GATA 37 90 IPR000679 GO:0006355|GO:0043565
Lsi05g01573 147 PANTHER OS01G0976800 PROTEIN 2 147 - -
Lsi05g01573 147 SMART GATA_3 32 89 IPR000679 GO:0006355|GO:0043565
Lsi05g01573 147 ProSitePatterns GATA-type zinc finger domain. 38 63 IPR000679 GO:0006355|GO:0043565
Lsi05g01573 147 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 71 - -
Lsi05g01573 147 MobiDBLite consensus disorder prediction 1 53 - -
Lsi05g01573 147 MobiDBLite consensus disorder prediction 15 41 - -
Lsi05g01573 147 Pfam GATA zinc finger 38 72 IPR000679 GO:0006355|GO:0043565
Lsi05g01573 147 Gene3D - 32 130 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02449 Lsi-Chr2:31040706 Lsi05g01573 Lsi-Chr5:23500178 2.04E-17 dispersed
Lsi04g01429 Lsi-Chr4:22035852 Lsi05g01573 Lsi-Chr5:23500178 8.19E-17 dispersed
Lsi05g01573 Lsi-Chr5:23500178 Lsi07g00251 Lsi-Chr7:2782895 5.37E-13 dispersed
Lsi02g02837 Lsi-Chr2:34546351 Lsi05g01573 Lsi-Chr5:23500178 6.61E-06 transposed
Lsi03g00696 Lsi-Chr3:9136922 Lsi05g01573 Lsi-Chr5:23500178 1.11E-06 transposed
Lsi05g01573 Lsi-Chr5:23500178 Lsi06g00078 Lsi-Chr6:702655 1.72E-23 wgd
Lsi05g01573 Lsi-Chr5:23500178 Lsi09g01468 Lsi-Chr9:22667938 2.55E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25390 PF00320 GATA 8.70E-17 CL0167 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01573 - - csv:101209503 269.24