Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01573 ATGATGATGGATCCGAGTGACAGAGGATCGGAATCAGAGGACATGTCCGGTAAGAACTCCAGTGGGGTTTCGTCGGAGGAGAGTCAAGTGAATGAGCAGAACAAGAAGACTTGTGCTGACTGTGGTACTTCGAAAACCCCTTTATGGAGAGGCGGTCCGGCTGGTCCAAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGTAGGAAGAAGAGGAGAGCGATTTTGGGGTTGAGCAAAGGGGTTGTAGAAGATAAGAAGAGCAAAAAGAACAGTAATATTAGCAATAGTAAGTTGAGAGATAGTTTGAAACAAAGGCTTTTGGCTTTGGGTAGAGAAGTTTTGATGCAGAGATCTACTGTTGAGAGGCAAAGGAAGAAGTTAGGAGAAGAAGAACAAGCTGCTGTGCTTTTGATGGCTTTATCCTATGGCTCTGTTTATGCTTGA 444 44.82 MMMDPSDRGSESEDMSGKNSSGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDKKSKKNSNISNSKLRDSLKQRLLALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23500178 23501788 - Lsi05G015730.1 Lsi05g01573 664065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01573 147 ProSiteProfiles GATA-type zinc finger domain profile. 32 68 IPR000679 GO:0006355|GO:0043565
Lsi05g01573 147 PANTHER OS01G0976800 PROTEIN 2 147 - -
Lsi05g01573 147 CDD ZnF_GATA 37 90 IPR000679 GO:0006355|GO:0043565
Lsi05g01573 147 PANTHER OS01G0976800 PROTEIN 2 147 - -
Lsi05g01573 147 SMART GATA_3 32 89 IPR000679 GO:0006355|GO:0043565
Lsi05g01573 147 ProSitePatterns GATA-type zinc finger domain. 38 63 IPR000679 GO:0006355|GO:0043565
Lsi05g01573 147 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 71 - -
Lsi05g01573 147 MobiDBLite consensus disorder prediction 1 53 - -
Lsi05g01573 147 MobiDBLite consensus disorder prediction 15 41 - -
Lsi05g01573 147 Pfam GATA zinc finger 38 72 IPR000679 GO:0006355|GO:0043565
Lsi05g01573 147 Gene3D - 32 130 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01573 - - - csv:101209503 269.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02449 Lsi-Chr2:31040706 Lsi05g01573 Lsi-Chr5:23500178 2.04E-17 dispersed
Lsi04g01429 Lsi-Chr4:22035852 Lsi05g01573 Lsi-Chr5:23500178 8.19E-17 dispersed
Lsi05g01573 Lsi-Chr5:23500178 Lsi07g00251 Lsi-Chr7:2782895 5.37E-13 dispersed
Lsi02g02837 Lsi-Chr2:34546351 Lsi05g01573 Lsi-Chr5:23500178 6.61E-06 transposed
Lsi03g00696 Lsi-Chr3:9136922 Lsi05g01573 Lsi-Chr5:23500178 1.11E-06 transposed
Lsi05g01573 Lsi-Chr5:23500178 Lsi06g00078 Lsi-Chr6:702655 1.72E-23 wgd
Lsi05g01573 Lsi-Chr5:23500178 Lsi09g01468 Lsi-Chr9:22667938 2.55E-51 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01074 CCT,ECH 101 351 C2C2-Gata Transcription Factor Family AT5G25830 57.0 2.8e-69 259.2
Lsi04g02328 CCT,ECH 39 352 C2C2-Gata Transcription Factor Family AT5G25830 50.9 6.3e-69 258.1
Lsi05g01573 . 2 147 C2C2-Gata Transcription Factor Family AT3G06740 60.4 8.4e-37 150.2
Lsi07g00224 . 21 299 C2C2-Gata Transcription Factor Family AT5G66320 50.5 6.7e-66 248.1
Lsi01g00626 . 105 281 C2C2-Gata Transcription Factor Family AT4G36240 50.8 1.2e-42 170.2
Lsi07g01258 . 72 580 C2C2-Gata Transcription Factor Family AT4G17570 52.2 1.9e-128 456.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001736 5 2 2 2 4 2 3 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 4 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25390 PF00320 GATA 8.70E-17 CL0167 Lsi TF