Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01584 ATGCGTGTTAAGGTTTACCGATTGAATGATGATGGCAAGTGGGATGACCAAGGAACAGGCCATGTCACTGTTGATTACGTGGAGAGGTCAGAGGAGTTGGGGCTGTTTGTCATTGACGAGGAAGACAATGAGACTTTACTTCTGCATCGTATCAGCCCAGATGATATCTATAGGAAGCAAGAAGACGAGGCATTTCATAGTGTGAATAGTGAGCTAAGGGAGCTTCCTGCCGTTGAGCTATCTACACTTCCGCTAATACTTAAGACTGTGGTTGAGAGTGGAATTGGAGATCAAATGAGGTTGACAGAACTCTTATTGAATGATAAAGAATTTTTCAGAAAGTTGATGAACCTTTTCCGAGTATGTGAAGATTTGGAAAATACCGATGGTCTTCACATGATATTTAAAATCGTTAGAGGAATTGACGATCCTGAGGTTCCACATACTCAGCAATTTCGTAATTTTTTGAAAGAGCACGTTGTATTTAAGGAGGCTATTCCCATTAAGGACCCCCCTGTTCTGTCAAAAATACATCAGACATATAGAGTTGGCTATTTAAAGGATGTTGTTTTGGCGCGAATGTTAGATGACTCCATGGTTGCTAATCTGAATTCAATAATTCATGCCAACAATGCAGCGGTTGTTACTTCATTGAAGGATGACAGTACCTTTATTCAGGAATTGATGGCTAGGGACCTTATGAATGAAGGTATCTTTGACATCGTTACTGATGTATTACAGAGTCAAGACAAAAAGCTTGTCTTAACAGGGACAGATATCCTCATTCTTTTTTTGAATCAGGATCCAAGTCTTTTGCGTACTCATGTTGTTCGACAGGAAGGATTTCCACTTTTTGGACTGCTGGTTAAAGGTATGGTAACAGATTTTGGGGACAACATGCACTGCCAGTTTCTTGAAATTCTTCGCAATCTATTGGATACTTATGCATTGTCTGGAGTCCAGAGAGATACAATTATTGAGATTTTCTATGAGAAGCATTTGGGCCAATTAATAGATATTATAACAGCATCATGTCCTACAGAAGGTTTTCAATCAGCCAAGAAAATTCAAGGGGCTGGTGGAAGTCTTGGAGATAAGAATGGTGTGAAGCCTGAGATTCTGTCAAACATATGCGAATTACTTTGCTTTTGTGTTCTCCAACACCCATATAGAATAAAGTCGAATTTTCTCCTAAATAATGTGATAGATAAAGTGCTGCTATTAACACAACGGAAGGAAAAATACTTGGTTGTTGCGGCAGTTCGATTTATTCGTACTGTTCTTTCACGCCATGATGAACATCTGATAAATTATTTTGTCAAGAACGGCACTATCAAACCTATCATAGATGCTTTTGTTGCTAACGGAAGTCGTTATAATCTACTTAATTCTGCTGTTTTAGAACTTCTCGAGTTTATTAGGAAGGAAAATTTGAAGTTATTGGTTAGATATATAATTGATTCCTTCTGGAATCAGTTGTCCAAATTTGAAAATTTGCCTTCCATTCAAGCTTTAAAAGTTAAATATGAGCAGTGCCTTGAAAATTGTGAAATGAAAGGCACTTCGAACACATCAGATCCTCGAAAAAGAAATGATGAGCGTGCTCTAGAGAAAGAAGAGGAAGACTATTTCAACGAGGACAGTGATGAAGAGGATACTGCATCGGCATCTGTTGCTCCCAAACAGAATGTAGAGTGTCAACGTGCTTTCCCTAATGGCGTTACTACAAATTACCCACCAGTAAGCACCTTCTACCTTTTCAGTTTTAGGTCAGGTGGTCTAGTTGATTATGATGATGACGAGGATGATGAAGACTACAGACCCCCCCATAGGAAACAACCTGACACTTCAGACGAAGACAATGAAGTGATGGAAGCACTCAGGCAGAAGCGGAAGTCGGCTCCTCAAGAGGAACATGAGATGGTCAAGAAGCAGCGACTGATCAAGAAGAACAAGCCAAAAGATGGAGTATTTGCTTCCTTGTGTACCACACTGAGTCAGGCTGTCTTACCTGGTAAGAAGACAACGTGCGCTACTCAATCCAGTCTGTGCACGTCTTATGAGAACAAAAGCTTAGGTGAAGAAAATCACGAGACAAGTCCTGCTATTTCTAGCAGCTCTTCTGATAGTAGTAGCAGCAATTCTGATGAGGATAGTCGCAGGGAAAAGGAATCTACAGCTTCTAGAAGTTACACCAACAGTAGTGTCTTGCATATTACTTCAGAAAATCGTCAGTTAGGTGTGGAAGACTATCCATTGATACCGCCAAAATCCTCGCCCGAAATGACTGTGAATGGATCTTCAAGTTAG 2310 40.09 MRVKVYRLNDDGKWDDQGTGHVTVDYVERSEELGLFVIDEEDNETLLLHRISPDDIYRKQEDEAFHSVNSELRELPAVELSTLPLILKTVVESGIGDQMRLTELLLNDKEFFRKLMNLFRVCEDLENTDGLHMIFKIVRGIDDPEVPHTQQFRNFLKEHVVFKEAIPIKDPPVLSKIHQTYRVGYLKDVVLARMLDDSMVANLNSIIHANNAAVVTSLKDDSTFIQELMARDLMNEGIFDIVTDVLQSQDKKLVLTGTDILILFLNQDPSLLRTHVVRQEGFPLFGLLVKGMVTDFGDNMHCQFLEILRNLLDTYALSGVQRDTIIEIFYEKHLGQLIDIITASCPTEGFQSAKKIQGAGGSLGDKNGVKPEILSNICELLCFCVLQHPYRIKSNFLLNNVIDKVLLLTQRKEKYLVVAAVRFIRTVLSRHDEHLINYFVKNGTIKPIIDAFVANGSRYNLLNSAVLELLEFIRKENLKLLVRYIIDSFWNQLSKFENLPSIQALKVKYEQCLENCEMKGTSNTSDPRKRNDERALEKEEEDYFNEDSDEEDTASASVAPKQNVECQRAFPNGVTTNYPPVSTFYLFSFRSGGLVDYDDDEDDEDYRPPHRKQPDTSDEDNEVMEALRQKRKSAPQEEHEMVKKQRLIKKNKPKDGVFASLCTTLSQAVLPGKKTTCATQSSLCTSYENKSLGEENHETSPAISSSSSDSSSSNSDEDSRREKESTASRSYTNSSVLHITSENRQLGVEDYPLIPPKSSPEMTVNGSSS 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23595064 23612765 + Lsi05G015840.1 Lsi05g01584 664076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01584 769 MobiDBLite consensus disorder prediction 539 553 - -
Lsi05g01584 769 MobiDBLite consensus disorder prediction 728 742 - -
Lsi05g01584 769 MobiDBLite consensus disorder prediction 604 645 - -
Lsi05g01584 769 Pfam Phosphatase 4 regulatory subunit 3 143 231 IPR006887 -
Lsi05g01584 769 MobiDBLite consensus disorder prediction 690 713 - -
Lsi05g01584 769 SUPERFAMILY ARM repeat 215 495 IPR016024 -
Lsi05g01584 769 SUPERFAMILY PH domain-like 1 64 - -
Lsi05g01584 769 MobiDBLite consensus disorder prediction 690 769 - -
Lsi05g01584 769 MobiDBLite consensus disorder prediction 523 538 - -
Lsi05g01584 769 PANTHER BNAC03G34820D PROTEIN 143 231 - -
Lsi05g01584 769 PANTHER BNAC03G34820D PROTEIN 2 62 - -
Lsi05g01584 769 PANTHER BNAC03G34820D PROTEIN 230 767 - -
Lsi05g01584 769 Gene3D - 1 75 IPR011993 -
Lsi05g01584 769 PANTHER ATP SYNTHASE GAMMA-RELATED 62 141 - -
Lsi05g01584 769 PANTHER BNAC03G34820D PROTEIN 62 141 - -
Lsi05g01584 769 PANTHER ATP SYNTHASE GAMMA-RELATED 230 767 - -
Lsi05g01584 769 MobiDBLite consensus disorder prediction 518 560 - -
Lsi05g01584 769 Gene3D - 190 491 IPR011989 -
Lsi05g01584 769 MobiDBLite consensus disorder prediction 597 649 - -
Lsi05g01584 769 PANTHER ATP SYNTHASE GAMMA-RELATED 143 231 - -
Lsi05g01584 769 PANTHER ATP SYNTHASE GAMMA-RELATED 2 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01584 K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3 - csv:101210978 1278.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01584 Lsi09g01483 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01584 Lsi-Chr5:23595064 Lsi09g01483 Lsi-Chr9:22877310 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g88 Blo01g00051 . . Bda08g00314 . Bpe14g01103 . Bma05g01015 Cmo08g01239 Cmo17g00353 Cma06g01556 Cma14g01597 Car06g01321 Car14g01409 . Cpe08g00157 Cpe03g01335 Bhi01g01080 . . Lac11g0927 . . Lcy11g1349 Cla06g00434 Cam06g0461 Cec06g0467 Cco06g0466 Clacu06g0448 Cmu06g0449 Cre06g1225 . . Cone7ag0106 Cone4ag0109 Lsi05g01584 Csa06g01744 Chy11g01562 Cme06g00778 Blo02g00481 . . Bda13g00212 Bpe05g00814 . Bma02g00925 . . Cmo06g01555 Cmo14g01627 Cma08g01270 Cma17g00363 Car08g01140 Car17g00336 Cpe12g00315 Cpe17g00061 Bhi12g01920 . . . . . Lcy12g0798 Cla05g00694 Cam05g0761 Cec05g0769 Cco05g0765 Clacu05g0752 Cmu05g0717 Cre05g0792 Lsi09g01483 Csa03g01510 Chy06g00746 Cme11g02073
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001634 1 6 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 4 2 1 71