Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01586 ATGACTAATATGGCTCTTCGAAAGTTTGTTTGTGGAGCTACACCTTCTATTAACTTGAAACATTCAAGTTTCCCCATTAAGTTGCATGAACAAACTCAATTTGAAGAACCTGAGACTAACCAGACATTGGAGCCAGATGTAGATATTGACCCTAGAGAAGTATATTTTCTTATTATGCACTTTCTTTCATCTGGGCCATGTCGTAGAACTTGTGGGCTACTATGGGATGAGCTTTTTGAACATCAGCTTTTACCCCGACGATATCATGCATGGTATTCTAGAAATGGGATGCATAGTGGCCATGAAAATGATGATGGCTTGTCATTTCCGTTAAGTTACCAACACTTAGTGGAGAGGTATCCACATGTCGATAAGAATCACCTGATAAAACTTTTGAAGCAATTGATACATAACAAGGCCCCTCCATCTAGAGGTATGAGTGGTGGAATTGCTCCAAATGCAGCTGACGTGCCTACATTATTGGGAACGGGCACATTTTCACTTTTGAGCTATGATAAACATGAAGGAGTTGTCAAACCCAGTGGTCCCCCAGCACACATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGCGGTTTCTCCCGACATCAACGTGCACCTTCTGTGCGTGCAGCATGTTATGCTATTGCTAAGCCATCAACAATGGTGCAGAAAATGCAAAACATAAAAAGGCTACGAGGGCACAGGAATGCTGTCTATTGTGCAATTTTTGATCGCATGGGAAGGTATGTTATAACTGGGTCAGATGATCGCCTTGTAAAGATTTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGTCGAGGACATGAGGGTGATATCACTGACCTCGCTGTTAGTTCTAACAATGCTGTGGTGGCATCATCTTCAAATGATTTTGTTATCCGTGTTGACTACCCGATCGCCATAGTGCCAAGTAAATCCCGTGGTAATAAAGGGCGAGGAGCGCAATCCTTTGATCTTGACCAAGTAAAATCATCATTGGATAAGGGAAACTCCACCAAGCTTAGATCGTCAGATGATGGAACATGTAGAATATGGGATGCTCGGAGCTCTTCTCAGAATGCTCCTCGGATTTATGTTCCAAGGCCTTTGGACTCTGTGACTGCAAGAAATGGTGGCTCTTCCGTGAGTACTCTTCCTCAGAGCCATCAAATATTTTGTTGTGCATTTAATGCTTGTGGAACTATTTTTGTTACTGGTAGTTCTGACACTCTAGCAAGGGTTTGGAGTGCCTGCAAAGGAAACAATGATAACCCAGACCAACCAAATCATGAGATTGATGTGTTAGCTGGCCACGAGAATGATGTCAATTATGTGCAATTCAGTGGATGTGCAGTAGCATCAAGATTTACAACTACCGACATTGCTAAGGAAGACAATGTTCACAAGTTCAAAAACTCCTGGTTCACTTATGACAATATAGTTACTTGTTCTCGTGATGGAAGTGCCATTATTTGGGTTCCAAGGTCACGGAGGTCACATGGGAAGGTCGGTCGCTGGACCCGTGCATACCATTTAAAAGTGCCACCTCCACCCATGCCCCCACAACCTGCCCGAGGCGGCCCTCGTCAGAGGATTCTTCCTACCCCTCGTGGTGTAAATATGATAATTTGGAGCCTAGATAATCGTTTTGTCTTAGCAGCTATAATGGTTTGTGCAAAATTTGTGGATGGATTTTCTGATAATGGAGTTGGGCTTTTTCTGGTTCGCCGGTGGGTTGCGAGAGGTGAAGAACATGGATTTCCATCTAATGTTTGGGCTTCTGGATGTACAGTCGTTGAAATGGCTATTGGCAATTCAATGGGAAGATTTGGAGACAGACCCATCAAGCTTCTTTGGGGGATTCTTCGACTGAAGGAGGTGGCGGCGACGGGGAGGGGAGTTCAAGGGCAGTTTAAGGGCTTTTACAAAACTCAGTCCTTAGTTCACTCTTTGACAGGTCATACTGAATCGACATATGTACTCGATGTTCATCCTTTCAATCCAAGGATTGCTATGAGTGCTGGATATGATGGAAAGACAATAGTTTGGGATAAAGCATTGGGGAGAACTTTTGATCACTTGGGGCCTGGGTCCCTGATTGAGTGGGTGGATATGAATGATTGGATTATTAGATACCCAAGGTGCCATAGAGATATGCGTGTTACTTTGATGTTACCATGGCCTTTGCTCTACAATCAGTTAGACGGGACATCAATTATACTTTCAGATGATGTTGGACAGCTATATATATTAAGCACAGGGCAGGGAGAATCCCAACAGGATGCCAAGTATGATCAGGAAACCCAACTCAGTACTTACAGAAGGAATTTGCAAGATCTTCTTTCTGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATACCAGCAAAGACGTTTAGGTGCTATGGGTCTTGAGTGGCGTCCCTCTTCTCTAAAACTTTCTGTTGGGCCCGACTTCAATCTCGACCCGGATTACCAATTGCTGCCTTTGGCAGACTTGGACATGTTGATTGAACCATTGCCTGACATTGTGGATGCAATGGATTGGGGACCAGAAAATGAAGTACAAAGCGAGGATACTGATTCAGAATACAACGTTACTGAAGATTATTCTACTGGTGGGGAGCAAAGAAGTCTAAATTCGAACTGCTCAACGGATCCAGAATGCAGTTCTGAAGACACGGGGATTGACGATGCTCCTGCTGATGGTCTTCGAAGATCAAAAAGGAAAAAACAGAAAGCAGATATGGAAGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGACGAAATATGGATGAGTATGAAGGCGATACTGTCAGGAGTTCCAGAAGTCGGAAGTCAAAATCTGGCCATAAGCCTTCCAAAAAGAAATCAGCATCCAAGTCATTAAGACCTCAAAGAGCGGCTGCACGTAATGCCCGCAATTGGATATCATCATTTAAGGGAAAATCTACAGATGGAGAAGAAGAATACGAGTCGGGAGGCGATTGCTCAGAAAGTGAATCTACGTTAGAAGATTCAGACATTGAGAGTGATGAATATGAAAGGTCATTGCAAAACAGAAATAAGCATTCAAAAGGGAAAGAAGTATTCTTAGACAGAGCCGAGGAGATTACAAAATCTCTTGATGTTCCTGAATCTCGTGTAGATGCTGGAAACAGAAAGAAGTTGATCCTTAAATTCTCCCTTAAGAATCCAAATAAGGTTGATCCTCCTTCAAACACAGCACTTACTTGTTCCAACATGGCTGATGTGGCTAGCTCATCATCAAGATCGCCAAAGGAAGTTATTGAAACCAGTCAGAATCTTATGAGATCTGAGAGGCAATTTGTAAATATTGATGGACATTCTGATCTGACTGAGGTCTACACTAATGGGAACATAAGATGGGGAGGGTCCAGGGTTCGTTCGTCCAAGCGCATAAGATTTGGGGATACTGCGCCTTCTGATGCATATGCAGTATCTAGTTCACTTCCCAATGGCGATCATAATGAAAATGAGAATGCAGTTCATGAATATTTAGAACAAGAAAATCATTTTGGTGCACCATCCCCCCATGCGAAGGTGCAGAATTATTCTGCAGATGAAATGGACGCAGTATCTCCCACAAATTTGAAGGATGAGGATGATAATGCTTCTGGGCATTCTCAGGATATGGTTAATGGTGGAGAGCTTAAATGTGTTAGCAACAAGTCATGTGATCATGACGATACAAGAAGTCATTTGAATTTCATGTTTTCTTCAGATGCAACCACCACAACAATACAAAATGGGACACCTGCTCCTGTGCAAACTGAAAATATTGCACCAATGCGTACAAAGATAACTTTCAAGAGTAATTCCTTGGATCCTGAACATTCTTTGAAGCATAAAATTGAATCCTTAGATGAAAGCTCGAAGAATGATGAATACAATACAGTATCTGGAAGCCCTCAGCATCTAAATGGGCTGCAGGATAGAGTCATGAATGAAACTTATTCTGATCTTAGAAATGATTGCCCACATGATATGGACATTGCAATGGATGAAAAGCCAGTTTCAAACCTATGCAACTCTGATGAGTTTATAAAAGCAGTTGAGACAAACAAAATGTACACTGCAGTTTATAAAAGATCTAAGTCAAACAAAGGAAAGAGCAATATAGATAGCAACGGTTGTGGCTCAGGAGAACATGCCTTGGGCAACAGTAGTCTACCTGCTGAAGCAGACAATCACAAAATTATGCTTCGGAAGACACGATCTTTAAGGTTTAAGGATTCCTCATTTGATCTAAATAATGTGGGTGATGATCTAAAATCAGACCAAGATCAAGAACTTGAACAGAGATCAAGACGTTCTGGAAATTCTTCTGCGAACAGATCCCATATACCAAGTGAAGAGTGGGGATCAAGCTCAAGGATGACAGTTGGATCCAGATCCACTCGAAACAGAAGGGGTACTCTTACTCAAGACATAAATCCAGTAGACAGAAGAAAGTCGGTTCAATATGCCAGAAAAGGATCGTGGTTAATGATGCCTGCACACGAGGGTGGCTCCAGATATATTCCCCAACTTGGAGATGAAGTTGCGTATCTGAGGCAGGGCCATCAGGAATACATAGATCACTGTTGTGCAAATTACTGTCACATAAAAGACATGGGACCTTGGACCTCAAACCGAGGAACCATACGAGCTGTTGAGTTCTGTAAGGTTGTGGAGCTTGTTTATTCAACTTCTGCAGGTTCCGGAGATAGTTGCTGTAAAATGCTACTCAAGTTCATAGATCCATCTTCCTATGTACACCTCCAATCTTTCAAGTTAACTCTGCCCGAGTTGACTAGTTTCCCTGACTTCTTAGTTGAAAGAACTCGGTTTGAAGCAGCAATGCAGAGGAATTGGACGTTCAGGGACAAGTGCAAAGTGTGGTGGAAAAATGACGTTGGAGTCGATGGTAGTTGGTGGGATGGTCGAATTGTCTCTGTGCAGGCAAAATCTTCTGAGTTCCCAGACAGTCCTTGGGAGAGGTACACAATTAAGTATAGGAGTGATCCTGCTGAACCACATTTACATAGTCCTTGGGAGCTGTATGATACTGTTACTCAGTGGGAACAGCCTCGAATAGATGATGAAAACAAAGCAAAGTTGCTAATGGCCATTGACAAATTAATGTCGCCCTCTATGCAGGGTCGTTATGGGATCCAAGATTTGATGCTTCTCTCACGGAAGACTCAATACAAGAACAGGTTTCCTGTGCCATTGTGCCTTGAGATAATCCAGGAAAGACTACAGAATGATTACTACCGAAGCTTGGAAGCTTTGAAGCATGACTTCATGGTTATGCTATCAAATTTCGAGTCGTTTGTGGCAAAGAATGAAGACATGTCGAAGAAAATTAGACGCTTGTCAGACTGGTTTGATCGTAACATATCACCTTTATAG 5460 42.56 MTNMALRKFVCGATPSINLKHSSFPIKLHEQTQFEEPETNQTLEPDVDIDPREVYFLIMHFLSSGPCRRTCGLLWDELFEHQLLPRRYHAWYSRNGMHSGHENDDGLSFPLSYQHLVERYPHVDKNHLIKLLKQLIHNKAPPSRGMSGGIAPNAADVPTLLGTGTFSLLSYDKHEGVVKPSGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRMGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVDYPIAIVPSKSRGNKGRGAQSFDLDQVKSSLDKGNSTKLRSSDDGTCRIWDARSSSQNAPRIYVPRPLDSVTARNGGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDIAKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMVCAKFVDGFSDNGVGLFLVRRWVARGEEHGFPSNVWASGCTVVEMAIGNSMGRFGDRPIKLLWGILRLKEVAATGRGVQGQFKGFYKTQSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDKALGRTFDHLGPGSLIEWVDMNDWIIRYPRCHRDMRVTLMLPWPLLYNQLDGTSIILSDDVGQLYILSTGQGESQQDAKYDQETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMGLEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLIEPLPDIVDAMDWGPENEVQSEDTDSEYNVTEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKKQKADMEVMTSSGRRVKRRNMDEYEGDTVRSSRSRKSKSGHKPSKKKSASKSLRPQRAAARNARNWISSFKGKSTDGEEEYESGGDCSESESTLEDSDIESDEYERSLQNRNKHSKGKEVFLDRAEEITKSLDVPESRVDAGNRKKLILKFSLKNPNKVDPPSNTALTCSNMADVASSSSRSPKEVIETSQNLMRSERQFVNIDGHSDLTEVYTNGNIRWGGSRVRSSKRIRFGDTAPSDAYAVSSSLPNGDHNENENAVHEYLEQENHFGAPSPHAKVQNYSADEMDAVSPTNLKDEDDNASGHSQDMVNGGELKCVSNKSCDHDDTRSHLNFMFSSDATTTTIQNGTPAPVQTENIAPMRTKITFKSNSLDPEHSLKHKIESLDESSKNDEYNTVSGSPQHLNGLQDRVMNETYSDLRNDCPHDMDIAMDEKPVSNLCNSDEFIKAVETNKMYTAVYKRSKSNKGKSNIDSNGCGSGEHALGNSSLPAEADNHKIMLRKTRSLRFKDSSFDLNNVGDDLKSDQDQELEQRSRRSGNSSANRSHIPSEEWGSSSRMTVGSRSTRNRRGTLTQDINPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHQEYIDHCCANYCHIKDMGPWTSNRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPSSYVHLQSFKLTLPELTSFPDFLVERTRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIVSVQAKSSEFPDSPWERYTIKYRSDPAEPHLHSPWELYDTVTQWEQPRIDDENKAKLLMAIDKLMSPSMQGRYGIQDLMLLSRKTQYKNRFPVPLCLEIIQERLQNDYYRSLEALKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFDRNISPL 1819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23617637 23646764 - Lsi05G015860.1 Lsi05g01586 664078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 1385 1412 - -
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 1005 1026 - -
Lsi05g01586 1819 Gene3D - 397 565 IPR015943 GO:0005515
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 866 1041 - -
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 959 976 - -
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 1215 1237 - -
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 1027 1041 - -
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 912 958 - -
Lsi05g01586 1819 Gene3D - 223 378 IPR015943 GO:0005515
Lsi05g01586 1819 Gene3D - 653 773 IPR015943 GO:0005515
Lsi05g01586 1819 PANTHER WD REPEAT DOMAIN 9 42 572 - -
Lsi05g01586 1819 PANTHER WD REPEAT DOMAIN 9 746 1818 - -
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 1438 1499 - -
Lsi05g01586 1819 SMART bromo_6 1715 1818 IPR001487 GO:0005515
Lsi05g01586 1819 SMART WD40_4 655 695 IPR001680 GO:0005515
Lsi05g01586 1819 SMART WD40_4 439 504 IPR001680 GO:0005515
Lsi05g01586 1819 SMART WD40_4 389 427 IPR001680 GO:0005515
Lsi05g01586 1819 SMART WD40_4 234 273 IPR001680 GO:0005515
Lsi05g01586 1819 SMART WD40_4 276 314 IPR001680 GO:0005515
Lsi05g01586 1819 SUPERFAMILY Bromodomain 1751 1817 IPR036427 GO:0005515
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 1385 1405 - -
Lsi05g01586 1819 Gene3D - 1742 1819 IPR036427 GO:0005515
Lsi05g01586 1819 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 276 - -
Lsi05g01586 1819 SUPERFAMILY Tricorn protease domain 2 536 771 - -
Lsi05g01586 1819 CDD Bromo_WDR9_I_like 1695 1817 - -
Lsi05g01586 1819 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 42 572 - -
Lsi05g01586 1819 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 657 696 - -
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 880 904 - -
Lsi05g01586 1819 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 282 IPR001680 GO:0005515
Lsi05g01586 1819 SUPERFAMILY WD40 repeat-like 231 696 IPR036322 GO:0005515
Lsi05g01586 1819 Pfam Bromodomain 1750 1804 IPR001487 GO:0005515
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 1458 1499 - -
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 1438 1457 - -
Lsi05g01586 1819 Pfam WD domain, G-beta repeat 399 427 IPR001680 GO:0005515
Lsi05g01586 1819 Pfam WD domain, G-beta repeat 236 273 IPR001680 GO:0005515
Lsi05g01586 1819 Pfam WD domain, G-beta repeat 279 313 IPR001680 GO:0005515
Lsi05g01586 1819 Pfam WD domain, G-beta repeat 657 695 IPR001680 GO:0005515
Lsi05g01586 1819 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 746 1818 - -
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 1315 1329 - -
Lsi05g01586 1819 PANTHER WD REPEAT DOMAIN 9 657 696 - -
Lsi05g01586 1819 MobiDBLite consensus disorder prediction 1309 1329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01586 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 2020.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01586 Lsi-Chr5:23617637 Lsi02g01893 Lsi-Chr2:24833368 1.09E-10 dispersed
Lsi02g02285 Lsi-Chr2:29422484 Lsi05g01586 Lsi-Chr5:23617637 4.97E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41