Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01595 ATGACAAATCTACTAAACCAACCAACAAAATCTCTTCACGTGGTGCAAAATATACCCACAAGGATTAAAGTGCAGAGCGACTCCAATGACCGCCACGTGGACATATACTTACCAGTCACATTTCAGCCCCAACATCCCGAAAATGCCCTTTTGTTTCTTCCGTTAAACAAAATCGTATCAGCAATACATTTTGGAGGTCAAAATCGTAATTTAGTCTCTGTTCTTCTTCTTCTACAGAGCTCCTTCGAAATCAAATTCAGACAGTGTAAACCGTCAAAACAAAACCAGAGAAAAATGCAAGTCTTCTCTTCGTCTCCTTCAACCGCAAGCTTCAATCTCTTCTCTTCCTCTCAGAATTCGGCCAATCTATCGAAGTACAGATGCAAAATCTCCATTATACCCCTACATTCCGCCCATAATTCCCTCTCCGTTCCGCCGTGCTGCTCTTCGAGGGACTCTTCGACGGCGGTTCTCGTCGCCGATCGATCATCGGACGGGCTGAACAGAGAGGTGTCCGAAGAGGTAATTACGATTCGGCGGCCGGTTATGGAGTTTCCTGGCGAAGATTCCGGCGACGGCGAGGATGAGGAAACGGAAATTGAGAGTAGATCTTCGTCGATAGATGTAAGGCTAACGGAGGTAGCGAAGAAGATGCCGATTTTTGAACCGGAGAATCGAGTGGATTCGAGTGCCCTAGAAAGGCCGCTGATTATCAATTTGGATTTGGCGTTGTACAGAGCGAAGATGTTGGCGAGGAATTTTCAGTGTGATGAAGCACAAGAAGTCCTTCGGAAGTGTATAAATAAATGGCCGGAGGATGGGCGGGCTTATGTAGCATTGGGGAAGATGTTGGGGAAGCAAATGAAAGCAGCTGAAGCTAAAGCTGTGTATGAGAGAGGCTGTCAAGCCACGCAAGGAGAGAACTCCTATATTTGGCAGTGCTGGGCTGTTCTGGAGAGCAGGATGGGGAACATCAGGAAGGCAAGAGAGCTGTTCGATGCAGCCACAGTAGCCAACAAGAAACACATTGCAGCATGGCATGGCTGGGCTGTGCTAGAGCTAAAGCAAGGGAACATCAAGAAGGCCAGGAATTTACTCGCCAAAGGCCTCAAATACTGTGGTGGAAATGAGTATATTTATCAGACACTTGCACTGCTCGAAGCCAAATCGAAACGGTACGAACAGGCTCGTTATTTGTTTAAGCAGGCTACCAAGTGCAACCCCAAGAGCTGTGCTAGTTGGCTTGCATGGGCGCAGCTGGAGATGCAGCTGGAGAACAACCTTCTTGCTAGAGAACTATTTGAGAAAGCCATCCAGGCCAGCCCCAAGAACAGATTTGCGTGGCATATATGGGGACTCTTTGAAGCTAATATGGGAAATATTGAAAAGGGAAGGAAACTTTTAAAGATAGGCCATGTCCTCAATCCAAGAGACCCTGTTCTTCTTCAGTCTCTTGGTTTATTGGAGTATAAGAACTCCTCTGCAAGCCTTGCTCGAGCTTGGGGTGTTCTGGAACAGAGAGTAGGCAATCTATCAGCAGCAAGAAGATTGTATAGATCCTCTCTAAACATAAATTCTCAGAGTTATGTAACATGGATGACATGGGCAACATTGGAAGAGGATCAAGGGAATGCAATCCGAGCTGAGGAAATTCGAAATCTCTATTTCCAGCAGCGAACTGAAGTTGTGGATGATGCTTCATGGGTTATGGGATTTTTAGACGTTATTGATCCAGCACTGGACAGCATAAAGAGACTGTTGAAGCTGGAGCAAGACCCATTCACCGCGTCTAGAACAGGAGATGGAGGCCCTCGAAACACCTCCGTAGACGACTCGGCTGCCTCCTCTTCTGGTAACAATGTGGTTGAAACTGAAACTGGGTTTGATTTGGATGCCTTTATTATGAAAAAGTTGTCTATAGACACATCAAAACTCGAAATTCAGCTTGAAGCAACTCGGCCCAAAAGGTTCAAGTATCAAAGGAGGCAATTGAAACCAGAAAATAGACAAGAAATGGTTGTTTCACAAAGCCAAAGAACAGAATCATCATCAGGATAA 2058 45.82 MTNLLNQPTKSLHVVQNIPTRIKVQSDSNDRHVDIYLPVTFQPQHPENALLFLPLNKIVSAIHFGGQNRNLVSVLLLLQSSFEIKFRQCKPSKQNQRKMQVFSSSPSTASFNLFSSSQNSANLSKYRCKISIIPLHSAHNSLSVPPCCSSRDSSTAVLVADRSSDGLNREVSEEVITIRRPVMEFPGEDSGDGEDEETEIESRSSSIDVRLTEVAKKMPIFEPENRVDSSALERPLIINLDLALYRAKMLARNFQCDEAQEVLRKCINKWPEDGRAYVALGKMLGKQMKAAEAKAVYERGCQATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNIKKARNLLAKGLKYCGGNEYIYQTLALLEAKSKRYEQARYLFKQATKCNPKSCASWLAWAQLEMQLENNLLARELFEKAIQASPKNRFAWHIWGLFEANMGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASLARAWGVLEQRVGNLSAARRLYRSSLNINSQSYVTWMTWATLEEDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGFLDVIDPALDSIKRLLKLEQDPFTASRTGDGGPRNTSVDDSAASSSGNNVVETETGFDLDAFIMKKLSIDTSKLEIQLEATRPKRFKYQRRQLKPENRQEMVVSQSQRTESSSG 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23697349 23706072 - Lsi05G015950.1 Lsi05g01595 664087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01595 685 ProSiteProfiles TPR repeat profile. 377 410 IPR019734 GO:0005515
Lsi05g01595 685 MobiDBLite consensus disorder prediction 669 685 - -
Lsi05g01595 685 SMART hat_new_1 357 389 IPR003107 GO:0006396
Lsi05g01595 685 SMART hat_new_1 391 423 IPR003107 GO:0006396
Lsi05g01595 685 SMART hat_new_1 323 355 IPR003107 GO:0006396
Lsi05g01595 685 SMART hat_new_1 425 457 IPR003107 GO:0006396
Lsi05g01595 685 SMART hat_new_1 509 541 IPR003107 GO:0006396
Lsi05g01595 685 SMART hat_new_1 288 321 IPR003107 GO:0006396
Lsi05g01595 685 SMART hat_new_1 459 491 IPR003107 GO:0006396
Lsi05g01595 685 SMART tpr_5 377 410 IPR019734 GO:0005515
Lsi05g01595 685 SMART tpr_5 309 342 IPR019734 GO:0005515
Lsi05g01595 685 SMART tpr_5 495 528 IPR019734 GO:0005515
Lsi05g01595 685 SMART tpr_5 411 444 IPR019734 GO:0005515
Lsi05g01595 685 SMART tpr_5 240 273 IPR019734 GO:0005515
Lsi05g01595 685 SMART tpr_5 274 307 IPR019734 GO:0005515
Lsi05g01595 685 SMART tpr_5 343 376 IPR019734 GO:0005515
Lsi05g01595 685 MobiDBLite consensus disorder prediction 600 621 - -
Lsi05g01595 685 MobiDBLite consensus disorder prediction 658 685 - -
Lsi05g01595 685 Pfam Tetratricopeptide repeat 383 444 - -
Lsi05g01595 685 MobiDBLite consensus disorder prediction 184 205 - -
Lsi05g01595 685 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 495 665 IPR044624 GO:0003729|GO:0006397
Lsi05g01595 685 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 103 499 IPR044624 GO:0003729|GO:0006397
Lsi05g01595 685 Gene3D Tetratricopeptide repeat domain 229 567 IPR011990 GO:0005515
Lsi05g01595 685 SUPERFAMILY TPR-like 255 489 IPR011990 GO:0005515
Lsi05g01595 685 MobiDBLite consensus disorder prediction 594 621 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01595 - - - csv:101215572 1000.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01595 Lsi-Chr5:23697349 Lsi09g01682 Lsi-Chr9:25260481 1.07E-06 dispersed
Lsi05g01595 Lsi-Chr5:23697349 Lsi10g00314 Lsi-Chr10:5033307 2.97E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g70 . . . . . . . . . . Cma06g01562 . Car06g01327 . Sed02g1137 Cpe08g00151 . Bhi01g01088 Tan10g1075 Cmetu06g0442 . Hepe05g1383 . Lcy11g1338 . . . . . . . . . Cone7ag0100 . Lsi05g01595 . . Cme06g00788 . Blo07g00145 Bda11g00502 . . Bpe13g00695 . . . Cmo06g01559 . . . . . . . . . . . . . . Cla05g00705 Cam05g0772 Cec05g0780 Cco05g0773 Clacu05g0762 Cmu05g0728 Cre05g0802 . Csa03g01517 Chy06g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011618 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 30