Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01597 ATGGTGATATTCCGAATTCTTGCTGCTTTGTTCAATTTTGTTAATGCAATTTCTTTTGCTTCCTTCCTACTGTTTACATTGATAAATGGTGTTTGGGATTGCTCGGAAGGTATTATGGCTGAACCAATATACACTGTAGCTTCTGATAGTGAAACTACAGGGGAAGAAAAAACAACATCAACCTTTCCGGAAATTGCAGTTGGAATTGATATTGGTACTTCACAATGTAGTATTGCAGTTTGGAATGGATCTCAGGTAGAGCTTCTTAAGAACACTAGAAATCAGAAAATTATGAGATCATATGTCACCTTCAAGGACGACACTCCTTCTGGAGGAGTTAGTAATGAGCTCAGCCATGAGTATGACATGCTCTCTGGTGCTGCAATTTTCAATATGAAACGCTTGATTGGAAGAGTTGACACTGACCCAGTTGTTCATGCATGCAAGAGCCTTCCTTTTCTAGTGCAAACTTTGGACATTGGTGTTCGTCCATTTGTTGCGGCTTTGGTGAATAATGTATGGAGATCTACCACTCCCGAAGAAGTTCTGGCGATCTTTATCGTTGAACTGAAAATGATGGCTGAATATCAACTAAAGCGGCCAATTAGAAATGTTGTTTTGACAATCCCAGTTTCATTCAGCCGATTTCAACTTACTCGGGTGGAACGAGCTTGTGCAATGGCTGGACTTCAAGTTAGATTGATGCCTGAACCAACAGCAGTAGCTTTATTATATGCTCAACAGCAGCAGCAGGCTGTACATGAGAGCATGGGCAGTGGAAGTGAAAAAATTGCCCTTATTTTCAACATGGGAGCTGGGTATTGTGATGTTGCCGTGTCAGCAATAGGAGGAGGAGTGTCGCAGATCAGATCTCTGGCTGGAAGTCCTATAGGAGGTGAGGATCTACTTCAAAACACCATGAAGTATCTTTTGCCAAATTCTGAATCTATATTCTCACATCGTGGGATTGATGAGATCACAAGGATGGGCTTGCTCCGAGTTGCAACTCAAGATGCTATCCACAAGCTTTCATTCCAGTCTAGTGTTCAAATCGATATCAACTTGGGAAATGGGTCAAAATTATGCAAGGTTCTAAGCCGAGAGGAGTTTGAGATGGTGAACAGCAAGGTGTTTGAGAAATGCGAGAACCTCGTAAAGCAATGCTTACATGATGCAAGAATAGGGATTGAAGATTTGAGCGATGTAGTAGTAGTTGGTGGATGTTCATACATACCAAAGATCAGAAATCTTCTGATGGAAATAAGTAAAAAGAAGGCACTATATGAAGGAATAGATCCTTTAGAAGCTGCTGTTTCTGGTGCAGCTTTAGAAGGTGCAATAGCATCAGGCATTGGGGATCCATTTGGCAGTTTAGATCTTCTTAGCATCCAAGCGACTCCTCTTGCCATTGGAATTCGAGCTGATGGAAACAGCTTCATTCCAATTATTCCCAAGAACACCACAATGCCAGCACGCAAGGAGTTGGTTTTCACAACTGTTCAAGACAATCAAAGTGAGGCCCTGATTGTTGTCTATGAAGGTGAAGAGACAAGAGCAGAGGAAAACCATCTGCTTGGCTATTTCAAGATCATTGGAATTCCACCTGCACCCAAAGGAGTCCCTGAAATCACTATTTGTATGGACATTGACTCTTCAAATATGCTTAGAGTGCTAGCCGGGGCAACACTCCCAGGTGCTCAACACCCTGCAACTCCTTACATGGAAGTCAAGATGCCGACGGTTGACGACGGACATGGCTGGTGTGCAGAAGCTCTGCATGGAAAATATGGTGCCACCATGGAATTGGTTACATTGCGGAAGAAAAGCTAG 1830 42.68 MVIFRILAALFNFVNAISFASFLLFTLINGVWDCSEGIMAEPIYTVASDSETTGEEKTTSTFPEIAVGIDIGTSQCSIAVWNGSQVELLKNTRNQKIMRSYVTFKDDTPSGGVSNELSHEYDMLSGAAIFNMKRLIGRVDTDPVVHACKSLPFLVQTLDIGVRPFVAALVNNVWRSTTPEEVLAIFIVELKMMAEYQLKRPIRNVVLTIPVSFSRFQLTRVERACAMAGLQVRLMPEPTAVALLYAQQQQQAVHESMGSGSEKIALIFNMGAGYCDVAVSAIGGGVSQIRSLAGSPIGGEDLLQNTMKYLLPNSESIFSHRGIDEITRMGLLRVATQDAIHKLSFQSSVQIDINLGNGSKLCKVLSREEFEMVNSKVFEKCENLVKQCLHDARIGIEDLSDVVVVGGCSYIPKIRNLLMEISKKKALYEGIDPLEAAVSGAALEGAIASGIGDPFGSLDLLSIQATPLAIGIRADGNSFIPIIPKNTTMPARKELVFTTVQDNQSEALIVVYEGEETRAEENHLLGYFKIIGIPPAPKGVPEITICMDIDSSNMLRVLAGATLPGAQHPATPYMEVKMPTVDDGHGWCAEALHGKYGATMELVTLRKKS 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23711795 23714625 + Lsi05G015970.1 Lsi05g01597 664089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01597 609 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 42 608 - -
Lsi05g01597 609 SUPERFAMILY Actin-like ATPase domain 261 447 IPR043129 -
Lsi05g01597 609 Gene3D - 130 185 - -
Lsi05g01597 609 Pfam Hsp70 protein 66 563 IPR013126 GO:0005524|GO:0140662
Lsi05g01597 609 Gene3D - 67 446 - -
Lsi05g01597 609 PRINTS 70kDa heat shock protein signature 459 478 - -
Lsi05g01597 609 PRINTS 70kDa heat shock protein signature 399 415 - -
Lsi05g01597 609 PRINTS 70kDa heat shock protein signature 65 78 - -
Lsi05g01597 609 PRINTS 70kDa heat shock protein signature 431 451 - -
Lsi05g01597 609 PRINTS 70kDa heat shock protein signature 205 225 - -
Lsi05g01597 609 PRINTS 70kDa heat shock protein signature 93 105 - -
Lsi05g01597 609 PRINTS 70kDa heat shock protein signature 540 556 - -
Lsi05g01597 609 PRINTS 70kDa heat shock protein signature 273 283 - -
Lsi05g01597 609 Gene3D Actin; Chain A, domain 4 299 380 - -
Lsi05g01597 609 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 457 569 IPR029047 -
Lsi05g01597 609 Gene3D - 250 428 - -
Lsi05g01597 609 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 461 560 IPR029047 -
Lsi05g01597 609 SUPERFAMILY Actin-like ATPase domain 65 247 IPR043129 -
Lsi05g01597 609 PANTHER HEAT SHOCK PROTEIN 70KDA 42 608 IPR013126 GO:0005524|GO:0140662
Lsi05g01597 609 CDD HSP70_NBD 67 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01597 K09489 HSPA4; heat shock 70kDa protein 4 - csv:101206971 1085.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01597 Lsi-Chr5:23711795 Lsi11g00825 Lsi-Chr11:10226844 1.25E-87 dispersed
Lsi05g01597 Lsi-Chr5:23711795 Lsi01g01415 Lsi-Chr1:12295409 2.82E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g20 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g01597 . . Cme06g00817 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01537 Chy06g00774 .
Vvi5g487 . . . . . . . . . . . Cma14g01701 . Car14g01537 Sed12g0915 . Cpe03g01430 Bhi01g00820 Tan10g0851 Cmetu06g1845 . Hepe05g1544 . Lcy11g1539 . . . . . . . . . . . Lsi05g01597 Csa02g01145 . Cme06g00615 . Blo07g00214 Bda11g00572 . . Bpe13g00611 . Bma06g01551 . . Cmo14g01744 . . . . . . . . . . . . . Cla05g00551 Cam05g0599 Cec05g0610 Cco05g0607 Clacu05g0597 Cmu05g0567 Cre05g0635 . Csa03g01338 Chy06g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010241 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32