Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01602 ATGGCAACTCTTCATTTTGTTCCATCTGCTTTCTCTCTACCCAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAGATAGCCTGCTCACGGCGGCGCTTGGTGGTCCGGTCGTACAAAGTGGTGATCGAGCACGAGGGGAAGGCCACCGAGCTTGAGGTCGATGCCGACGAGAGCATATTGAGCAGTGCATTGGACAATGGCATAGAAATTCCTCACGATTGCAAGCTTGGAGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGCATGCTGAGCGATGACGTTGTGGAGCAAGGCTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATAAAAACCATCCCTGAGGAAGAATTGTTGGCACTTCAATTAGCCACGGCTAATGACTAA 444 52.25 MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23755584 23756027 - Lsi05G016020.1 Lsi05g01602 664094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01602 147 TIGRFAM fdx_plant: ferredoxin [2Fe-2S] 45 137 IPR010241 GO:0009055|GO:0022900|GO:0051537
Lsi05g01602 147 SUPERFAMILY 2Fe-2S ferredoxin-like 44 141 IPR036010 GO:0051536
Lsi05g01602 147 Gene3D - 43 145 IPR012675 -
Lsi05g01602 147 Pfam 2Fe-2S iron-sulfur cluster binding domain 51 123 IPR001041 GO:0051536
Lsi05g01602 147 CDD fer2 48 130 IPR001041 GO:0051536
Lsi05g01602 147 PANTHER FERREDOXIN C 1, CHLOROPLASTIC 1 142 - -
Lsi05g01602 147 PANTHER FERREDOXIN 1 142 - -
Lsi05g01602 147 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 46 135 IPR001041 GO:0051536
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01602 K02639 petF; ferredoxin - csv:101206257 266.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01602 Lsi-Chr5:23755584 Lsi08g00647 Lsi-Chr8:14794670 5.67E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g504 . . . . . . . . . . . Cma14g01705 . Car14g01540 . . Cpe03g01433 . . . . . . . . . . . . . . . . Cone7ag0252 . Lsi05g01602 . . Cme06g00612 . Blo07g00219 Bda11g00577 . . Bpe13g00606 . Bma06g01556 . . Cmo14g01748 . . . . . . . . . . . . . Cla05g00546 Cam05g0596 Cec05g0606 Cco05g0603 Clacu05g0593 Cmu05g0563 Cre05g0632 . Csa03g01332 Chy06g00583 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011622 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30