Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01603 ATGTTCTTGAGGAGAGGGTTTGCTTTTGCTAGCCCTCAATTTGTTTGGAGGGCCTGCAGCTTTTGCTCAAAAGCATTGCCCAAGGGGAGCCTTGGAAGCGAGAATGAAAGGGCAGTTCATTCAGATAGCATTGTAAATGGTTCATCCAGGCCTCAGATATCTCCATTGTTCCCTGATGGTAAACCTCATTCAGTTGCTTATGATGTTGAACTTGTAGATGATGATACTTGGGCAGTTTCTTGTGGCTTAGCAAGAGCATGGGAAGGGAGAGAGAAGGGCTGGTCTGGCTTTGAAAATAGATACTTTTTAGAGGATGAGGCTCATGACCCAGTTGATTATTGTGATTCAGATTTTGATGATATTGACAACATGAGAATACGTGGAAATCTCTTCTACAAACTTGACCGAAGTTCCAAAGAGTTTGAAGAATATAGCCTTGATTTTCATCGGAAGAAAAAGTCTGTAAAGGAAAAGGAAGATATGCAGAAAAGCAGAAGCAAAGTCAATGATAAACTTGATAATTGTTTGGCAAGTGGCCATGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAGTTGAAAGGGAGAATGATGATGTTGAGAAGAAGCTTAGGACACCCACGTTTAATCAACTTACTGCTCCTTACCATGAGCCATTTTGTCTGGATATATACATATCAAAGGCCTCAGTTCGAGCCTGTGTCATTCACCGAGTGACTAGTAAGGTTGTTGCTGTGGCACATTCAATTTCTAAGGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCATAATCTGGTATACACTCCAAGAAAGGGCGAGAGGATAGAAGGGAAGCTTCAAATTGTGCTTCAGTCTGTCACTGATAATGGGATTCATGTTAAGATCAAAATGGCAAGCTCAAGTGAGAGTGAACGCAAGGAACCAGTGAACGAGCAAATGGTTGCAAACATGTATGGCGCTTTAAGGTCTGAACTCAATCAGATATACTCAAAAATCACAGAACTCGAAATGGAAGTCAGTGAGCACTCTCTGGTAATTTCTGCAATTGAGCCACTTGACCCATCAAGAAGATGCTACAGAATGATCGGTGGAGTGCTGGTGGAAAGAACTATCAAAGAGGTCCTGCCCGCTGTTCAACGGAACAAAGAGGGACTCGAGGAGGTCATTTCCAGACTCAATGAGGCCTTGGAGAAGAAGAAGAAGGAAATTTCTGACTTGGAGGCCAAATACAAGATCAGGATTAGAAAGCCTGATGGTGAGGCTAAGGAGGAAGACAGTGGGCGGAAAGAGGGTGCAGCCCAAGGAGTCTTAGTAGGCCCTGCAGGTGAAAGTTAA 1401 43.4 MFLRRGFAFASPQFVWRACSFCSKALPKGSLGSENERAVHSDSIVNGSSRPQISPLFPDGKPHSVAYDVELVDDDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYCDSDFDDIDNMRIRGNLFYKLDRSSKEFEEYSLDFHRKKKSVKEKEDMQKSRSKVNDKLDNCLASGHVKLPEHVKNKYVIVERENDDVEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACVIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQSVTDNGIHVKIKMASSSESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEVSEHSLVISAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRIRKPDGEAKEEDSGRKEGAAQGVLVGPAGES 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23758485 23760796 + Lsi05G016030.1 Lsi05g01603 664095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01603 466 Coils Coil 397 438 - -
Lsi05g01603 466 CDD Ribosomal_L18_L5e 217 313 - -
Lsi05g01603 466 Gene3D - 331 439 IPR009053 -
Lsi05g01603 466 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 223 314 IPR005484 GO:0003735|GO:0005840|GO:0006412
Lsi05g01603 466 MobiDBLite consensus disorder prediction 436 466 - -
Lsi05g01603 466 MobiDBLite consensus disorder prediction 436 452 - -
Lsi05g01603 466 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 45 322 IPR005484 GO:0003735|GO:0005840|GO:0006412
Lsi05g01603 466 SUPERFAMILY Translational machinery components 204 313 - -
Lsi05g01603 466 SUPERFAMILY Prefoldin 337 435 - -
Lsi05g01603 466 Gene3D - 196 314 - -
Lsi05g01603 466 Coils Coil 340 360 - -
Lsi05g01603 466 Pfam Prefoldin subunit 334 436 IPR002777 GO:0006457|GO:0016272|GO:0051082
Lsi05g01603 466 PANTHER EXPRESSED PROTEIN 45 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01603 K02881 RP-L18, MRPL18, rplR; large subunit ribosomal protein L18 - csv:101213193 584.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01603 Lsi-Chr5:23758485 Lsi11g00489 Lsi-Chr11:5168863 6.93E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g505 . . . . . Bpe14g01188 . . . . . Cma14g01706 Car06g01217 Car14g01541 . Cpe08g00258 Cpe03g01434 Bhi01g00814 . . . Hepe05g1550 . . . . . . . . . Cone14ag0854 . . . Lsi05g01603 . . . . . . . . . Bma02g00847 . . . Cmo14g01749 . . . . . . . . . . . . . Cla05g00544 Cam05g0595 Cec05g0605 Cco05g0602 Clacu05g0592 Cmu05g0562 Cre05g0631 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003116 1 3 2 2 2 1 3 1 1 1 1 1 2 1 2 2 1 3 2 1 2 2 2 1 1 1 1 4 1 2 50