Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01608 ATGGAGTCAATTGATGGATTAACCTCAACCAATTACAAGGCGGGATCTGTCTCCAGCCTCCAAATGGCCATTTCATCAGTGTTTTCTAGGTGGGACGGCCTTCAAATGGCCATTGAAAACCAATGGGGAGGTCGCGACTCTCACCAGAAATCTCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACCTCCTTTATACGTGGAAGATCTGGAAAATTTGCTCCATGAAACCCTGTTGCTCTCCTTCAACACCGAGATCGAAGATGGCAGCATCGAACAGGTCCAGTACTTCGGCGGTCCATCAAAGGCGTCAAGCCTTCTTTCTCTTCCCGTTGTGCGGCGGCAGGAACCTTTTACTCGACTTCCTATGCTTTGGTTCGTTCGTCAACCATTTCAGATGTCGGGGGATCCTGTGGATACTGAAGTTCTTGAGGATACAAATGGCTGCACGCCTAGGGCGAACAAAAATGAACTGATCCTTAGGCCAGTTTCTCAAGATGAATCTGGGGAGGGCTTGCCATATGCTCCTGAAAATTGGCCCAATCCTGGTGATAACTGGAGTTGGAGGGTGGGGAAGAGAGTTGCTATAACTGGCCATTTTCTGGATAGGTACCTTTATTCTCCTCGTGGTATTGGCACTTCTGAGAACTCAGCTCGTAAAGGGCAGGGTTTTGCAAGCAAGCTTTCAGTTGAAAGATATATCCAGTCTGAGTTCCCTAATGTAGACATTGATGCATTTTTTGCCTCATTCAGTTGGAGGATACCAGCAAAAAAGTCATCTTTTGCGCAAGGTATTCGAGTAAAGCAAATTCCTTGCCCTCTGCCCTCAAAAGAGATGGAAGAATGCTCGGCATCTGAGTCCCAGATTGATAGAGTGGGTTGCAAGGCTGGAAATAAGAACTGTAATAGTTTATCTGTTGCTGAAAATCCATCTTCGTTAAAATCCATGTCCTGTGATATTTGCTGCAGTGAACCTCGGTTTTGCCGTGATTGCTGCTGTATACTTTGCAGCAAGATTATAGACACAACCACGGAAAGCTATAGCTACATAAAATGTAAAGCAGTGGTGGGTGATGGTTATATTTGTGGACATCATGCTCATATAAAATGTGGTCTTAAATCGTATACAGCAGGGACAGTTGGAGGAAGCATTGGATTGGATGCTGAGTATTATTGTCGACGTTGTGATGCCAGAACGGATTTGGTATCACATGTAGAAAGATTTTTGCAGTCGTGTCAATCAGCTGACTGTCTAGATGATATTGAGGAGATCTTCAGCCTTGGTTTCCGCATTTTGCGTGGTTCGCACAAAATGAGAGCAAAGGAGTTGTTAAGACATATTGAATTGAACATTGAAAAGCTTAAAACTGGGGCTTGCTTGGAAGAGATTTGGAAGATGGAGGAAGACAGCTCAGCGAATTGCACTGATGCCCCTGATAATGCTGATTCTAGAGATGGTTCTCATGACACTTCAGACTCCAATATAAGCTCAGAATGGACTATGTCCACCCCTTTTGATCATTGGATTGAGTCCCTAAAACTTGAAGACGAGATTGATCAGGTTTTGCAGGGACTGAAAAGATCACAAGAGTTCGAGTATAATTTAGCAGAAGAAAAGCTTCTATTACATAAAAATTATCTACATAATCTCTTTCAGCAACTTGAAAATGAACTCAGACATCAAACATCATCAACGGGACAAAATGCCGTAACAAACAGAGTGGACCAAATAAAACAAGAAGTAAAGAGACTCAAGAGAATGGAAAAGGTTGCTGATGGATTTGGAATGACTCCGAAAGATATCCTCAAGGAGGACTTCGATTTGGATGTTCAATAG 1848 43.29 MESIDGLTSTNYKAGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVQYFGGPSKASSLLSLPVVRRQEPFTRLPMLWFVRQPFQMSGDPVDTEVLEDTNGCTPRANKNELILRPVSQDESGEGLPYAPENWPNPGDNWSWRVGKRVAITGHFLDRYLYSPRGIGTSENSARKGQGFASKLSVERYIQSEFPNVDIDAFFASFSWRIPAKKSSFAQGIRVKQIPCPLPSKEMEECSASESQIDRVGCKAGNKNCNSLSVAENPSSLKSMSCDICCSEPRFCRDCCCILCSKIIDTTTESYSYIKCKAVVGDGYICGHHAHIKCGLKSYTAGTVGGSIGLDAEYYCRRCDARTDLVSHVERFLQSCQSADCLDDIEEIFSLGFRILRGSHKMRAKELLRHIELNIEKLKTGACLEEIWKMEEDSSANCTDAPDNADSRDGSHDTSDSNISSEWTMSTPFDHWIESLKLEDEIDQVLQGLKRSQEFEYNLAEEKLLLHKNYLHNLFQQLENELRHQTSSTGQNAVTNRVDQIKQEVKRLKRMEKVADGFGMTPKDILKEDFDLDVQ 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23774298 23786545 + Lsi05G016080.1 Lsi05g01608 664100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01608 615 MobiDBLite consensus disorder prediction 475 502 - -
Lsi05g01608 615 Coils Coil 571 591 - -
Lsi05g01608 615 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 141 614 - -
Lsi05g01608 615 Pfam Pre-rRNA-processing protein TSR2 22 98 IPR019398 -
Lsi05g01608 615 Pfam PHD - plant homeodomain finger protein 301 433 IPR032881 -
Lsi05g01608 615 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 141 614 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01608 - - - cmo:103483705 882.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02250 Lsi-Chr4:29538494 Lsi05g01608 Lsi-Chr5:23774298 8.73E-24 dispersed
Lsi05g01608 Lsi-Chr5:23774298 Lsi11g01358 Lsi-Chr11:22188371 2.86E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g513 . . . . . . . . . . . . Car06g01212 . Sed12g0930 . . Bhi01g00805 Tan10g0838 Cmetu06g0605 . . . Lcy11g1549 . . . . . . . . . . Cone4ag0247 Lsi05g01608 . . Cme06g00606 Blo02g00536 . . Bda13g00118 . . . . . Cmo06g01409 . . . . . . . . . . . . . . Cla05g00540 Cam05g0589 Cec05g0599 . . . . . Csa03g01326 Chy06g00577 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003503 1 5 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 4 1 48