Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01611 TCCAGTGTCTATGACCCACGCAACTATTATAACCCTGAGATCACTTCTACCCAAATTGGTGCTCAATTACATGGAAGGAAGATAAACTCTGCCGCATTTTACAGCATACCTGCCCATGTCACGCCACCTCCAAGGAGTCCTCCAAAGCTTCGCCCATGGCGGAGCTCCGATTACCAAACACCGCGACTAAACGGAGCAAACTGGAGATTACCAAGCAAGAGGCAAATCCCTCTGAGGACGGTACAGACTAGTGGGCCTATAATCTTGGGCCTTGGCTTATCCCACTCATCCTCCGTCCTCCCTCTTCAACTTCACACATACCCCACCAGACCCACGGCTCTCTCCGCCGCTCTCTCCTCCGCCTCCAGCCTCCTCCACCTCAAACAAGTTCACGCTCAAATCCTCCGCTCCAAACTCGAACGCTATGATTCCAATTCCCTACTTTTTGAACTTATTTTTTCCTCTTGCTCTCTCTCGCCTAGCCTCGACTATGCCCTCTCTGTGTTTGATCAAATTCCCCAGCCCAAGACCCGTTTCTGCAACAAGCTTCTGCGCGAATTATCACGAGGTTCTGAGCCGGAGGTTGCGCTTTTTGTGTACGAGAAGATGAGGGCTGAGGGCCTGAGTTTGGATAGGTTCTGCTTCCCTCCGCTGTTGAAAGCGGCTTCGAGGAATCTTTCCTTGAGAACGGGGATGGAGATTCATGGGCTCGCGTCGAAGTTGGGATTCGGGTCAGACCCATTTGTGGAGACGGGGTTGGTTAGAATGTACGCAGCCTGTGGAAGGATAATGGAAGCTCGGTTGGTGTTTGATAAAATGTCTCACAGGGATGTCGTTACTTGGAGCATCATGATTGACGGGTATTGCTTAAGTGGCTGTTATGATCTTGCCTTTCAACTCTTTGAAGAAATGAAGAGAACAGAGTTGGAACCAGATGAGGTGATTCTTTCTACAATTCTTTCTGCGTGCGCTCGTGCTGGAAATTTGGATTTTGGAACAAAAATACACGAGTTCATTACTAAGAAGAATATTGTCATGGATCCTCACTTACAAAGTGCTCTCATCACGATGTATGCAAGCTGTGGCTCCATGGACTTGGCTTGGGATTTGTATGAAAAGATATCCCCTAAGAACATGGTTGTTTCGACTGCCATGGTATCTGGGCTTGCAAAAGGTGGACAGATTGGAGATGCTCGCTATGTGTTTGATCAAATGGTAGAGAAGGACTTGATATGTTGGAGTGCAATGATTTCTGGATATACAGAGAGTGACTGCCCTCAAGAAGCTCTTGTATTATTCAAGAAAATGCAACAAAAGGGAATGAAACCTGATGTAGTCACCATGTTGAGTGTCATTTCATCTTGTGCTCATCTTGGCGCATTAGATCAAGCCAAATGGATACAAACTTATGTTGATAAAAATGGGTTTGGCAAGGCATTATCTGTCAATAATGCACTCATTGATATGTATGCCAAATGTGGGAGTCTAGAAGGAGCAAGAGAAGTCTTTGGAAAGATGCCAAAGAAAAATGTAATATCTTGGACAACTATGATTAATGCTCTTGCAATGCATGGAGATGCTCATAATGCTTTAAGCTTATTTCATCAAATGAAAGTTGAAAATGTTGTGCCTAATTGGATCACATTCATAGGGGTGCTTTATGCTTGTAGCCATGGAGGTCTAGTTGAGGAGGGCCGAAGACTATTTCATTCAATGACCAATGAGTATGGCATAAGTCCCAAGCATGAACACTTTGGTTGCATGGTTGACCTCTTTGGCCGTGCAAATCTTCTGAGAGAAGCTCTTGAGGTGATTGAGGCAATGCCATTTGCTCCTAATGCTATTATTTGGGGATCCCTTATGGCTGCTTGTCAGGTCCACAGTGAGACTGAGTTAGGAGAATTTGCTGCTAAACAAGTTCTCAAGCTCGAGCCTGATCACGATGGGGCCCTTGTCGTCTTATCGAACATATATGCTAAAGAAAGAAGATGGGAAGATGTTGGGGAAGTTAGAAAACTAATGAGCAATATGTGTGTTTCCAAAGAGAGAGGATGCAGTAGAATTGAATTGAACAATGAGGTCCATGAGTTTCAAATGGCAGATAGAAAGCACAAGCAAGCAGATCAAATATATCAGAAATTAGATGAGGTAGTTCAAAAGTTGAATCTGGTTGGTTATAAGCCACAGACAAATTGTGTGCTCGTTGATTTAGACGAAGAGGAAAAGAAGGAATTAGTCCTCTGGCACAGCGAGAAATTGGCACTTTGCTATGCTCTCATGAATGGAGGGCCACGCATTTGCATTATAAAGAACCTTCGAATTTGTGAGGATTGTCATGCTTTTATGAAATTAGCCTCAAAAGTATATGCCAGAGAGATCATTATTAGGGACAGAAGTAGATTTCACCATTACAGAGACGAGTTCTCCAACATTGGTCTTGCCAGAAATAGAAAGCACCAACCATCACATTCAAGCTCGAGTTCTCTAACAATGAGCTTTGTCGGTACTCAAGAACCCATGTATGAGGATCTAATTGCACAGCTGAGGCACCCCATCTCTTCTGCACCCAAGAAGTATTCGCCTCTCGAACCAGTTCTAACAATCTCCGCTGACAGCTTCGGTCGAATAACCCTAGCAATCGCACACGAAAACCCAGTAGTCACCGCAAAGATCAAACTCAGGACAAAAACTAACGTAACAAACCGACGCAACGAACTCGAATCTCCTTCCCCTTCCTCAGCCTTGAATCTCGAACTCAATTTCACTGGAGATTCAAATTTAGGATACTTCAAGATCCGAGATGTGACCGTAGTCGGCGTCGTCAAAATCGAAGGGTTAAAGGAAATCGGAGTGGTTTCGACATTAGGTCTCGAAGCAGAGAGCTTCGTCCAGAGTGGCGTTGATACTATCCAAACAAATCTTGCAGTCGCAATTCGCATCTTTCCGGCAACCGGGATAGTAACAGCTGTCGCGGGCTTCCGATCGCTCATCTTCTTCTATGGCGGCGGCGGTGGTGGTGGT 3021 45.08 SSVYDPRNYYNPEITSTQIGAQLHGRKINSAAFYSIPAHVTPPPRSPPKLRPWRSSDYQTPRLNGANWRLPSKRQIPLRTVQTSGPIILGLGLSHSSSVLPLQLHTYPTRPTALSAALSSASSLLHLKQVHAQILRSKLERYDSNSLLFELIFSSCSLSPSLDYALSVFDQIPQPKTRFCNKLLRELSRGSEPEVALFVYEKMRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAACGRIMEARLVFDKMSHRDVVTWSIMIDGYCLSGCYDLAFQLFEEMKRTELEPDEVILSTILSACARAGNLDFGTKIHEFITKKNIVMDPHLQSALITMYASCGSMDLAWDLYEKISPKNMVVSTAMVSGLAKGGQIGDARYVFDQMVEKDLICWSAMISGYTESDCPQEALVLFKKMQQKGMKPDVVTMLSVISSCAHLGALDQAKWIQTYVDKNGFGKALSVNNALIDMYAKCGSLEGAREVFGKMPKKNVISWTTMINALAMHGDAHNALSLFHQMKVENVVPNWITFIGVLYACSHGGLVEEGRRLFHSMTNEYGISPKHEHFGCMVDLFGRANLLREALEVIEAMPFAPNAIIWGSLMAACQVHSETELGEFAAKQVLKLEPDHDGALVVLSNIYAKERRWEDVGEVRKLMSNMCVSKERGCSRIELNNEVHEFQMADRKHKQADQIYQKLDEVVQKLNLVGYKPQTNCVLVDLDEEEKKELVLWHSEKLALCYALMNGGPRICIIKNLRICEDCHAFMKLASKVYAREIIIRDRSRFHHYRDEFSNIGLARNRKHQPSHSSSSSLTMSFVGTQEPMYEDLIAQLRHPISSAPKKYSPLEPVLTISADSFGRITLAIAHENPVVTAKIKLRTKTNVTNRRNELESPSPSSALNLELNFTGDSNLGYFKIRDVTVVGVVKIEGLKEIGVVSTLGLEAESFVQSGVDTIQTNLAVAIRIFPATGIVTAVAGFRSLIFFYGGGGGGG 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23794961 23804617 + Lsi05G016110.1 Lsi05g01611 664103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01611 1007 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 108 306 - -
Lsi05g01611 1007 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Lsi05g01611 1007 Pfam E motif 627 689 IPR046848 -
Lsi05g01611 1007 Pfam DYW family of nucleic acid deaminases 725 807 IPR032867 GO:0008270
Lsi05g01611 1007 Pfam PPR repeat 585 608 IPR002885 -
Lsi05g01611 1007 PANTHER - 108 306 - -
Lsi05g01611 1007 PANTHER - 296 394 - -
Lsi05g01611 1007 PANTHER - 391 809 - -
Lsi05g01611 1007 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 408 IPR002885 -
Lsi05g01611 1007 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Lsi05g01611 1007 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 391 809 - -
Lsi05g01611 1007 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 296 394 - -
Lsi05g01611 1007 TIGRFAM PPR: pentatricopeptide repeat domain 411 445 IPR002885 -
Lsi05g01611 1007 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Lsi05g01611 1007 TIGRFAM PPR: pentatricopeptide repeat domain 512 546 IPR002885 -
Lsi05g01611 1007 TIGRFAM PPR: pentatricopeptide repeat domain 484 510 IPR002885 -
Lsi05g01611 1007 TIGRFAM PPR: pentatricopeptide repeat domain 383 410 IPR002885 -
Lsi05g01611 1007 Gene3D Tetratricopeptide repeat domain 178 342 IPR011990 GO:0005515
Lsi05g01611 1007 Gene3D Tetratricopeptide repeat domain 482 715 IPR011990 GO:0005515
Lsi05g01611 1007 Gene3D Tetratricopeptide repeat domain 350 481 IPR011990 GO:0005515
Lsi05g01611 1007 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Lsi05g01611 1007 Pfam PPR repeat family 509 556 IPR002885 -
Lsi05g01611 1007 Pfam PPR repeat family 408 456 IPR002885 -
Lsi05g01611 1007 Pfam PPR repeat family 276 325 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01611 - - - bhj:120088878 1351.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01611 Lsi-Chr5:23794961 Lsi06g00945 Lsi-Chr6:19384143 0 dispersed
Lsi05g01611 Lsi-Chr5:23794961 Lsi02g02703 Lsi-Chr2:33403074 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g518 . . . . . . . . . . Cma06g01402 . Car06g01210 . . Cpe08g00265 . Bhi01g00798 . . . . . . . . . . . . . Cone14ag0857 . . . Lsi05g01611 . . . . . . . . . . . . Cmo06g01406 . . . . . . . . . . . . . . Cla05g00537 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014354 0 1 0 0 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 21