Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01615 ATGGAACGCCTTCTCTCTGAAATCCGGCCTTCTCCAGCACTCTCTGAGACGCCAAATTCTCCACATCCACCAACGCCTCCAGCCTCTCCAGTTCCGGCCACTCCACAAAAATCCTCTCCGCCACCAATTTTACCGCCGCCGTCCCGATCCCTTTCCCCCAAAATTTGGACCCCAAAACGTACCCTAGCTCTCCCCTGCACCGATCCCTCGCCGCCGTATTCGCCATTACCGAAATCGCGCCTACCGGCCGCCCGTCGACGCATATGGCTCGGTACCAGGGGTGCGACAGGACTTGGTCGCTCCCAGGAGCAGAATCGAGCGGCTTTCTCGTCCGCTGCCCAACCCATGAAATCGTCGATGTCGGTGAGATCTAGTGGGCGGAGAGTAATTGCCATGGCTGGCTGTGATGTGTTTTGGTTCTGCCGTAGGCCCGTAGCTGATCAATTCAGAACCATCGATACCACTTTTAGCCCCAAAGCCTCCGAGAACAATTGTCCCCCTTTCCGATCAATGAACTCATCAAGAATCTCCGTCCGGCAGTTCAATCTATCCGACGCCGACGATTTTCTCCGGTGGGCCGGCGACGACAGAGTAACCCGCTATCTCCGATGGAACACGATCACCTCCAAAGAAGAAGCATTCACTTACCTAGAGAAGGTCGCAATTCCCCATCCATGGCGGAGGTCCATATGCTTGGATGGCCGTTCCGTCGGGTACGTTTCGGTCAAGCCGGAATCGGAGGAGAAATGCAGAGCGCATATCAGTTATGCGGTGGCTGCAGAGCACTGGGGACGAGGGATAGCCACGATAGCACTGAGGGCGGCGATTCCGGCGGCGCTGAGAGAGTTTCCGGAGGTGGTTAGGGTTCAGGCGCTGGTTGAGGTGGAGAACGAGGGATCACAGAGGGTTCTGGAAAAATTGGGATTTTGCAGAGAGGGGCTGTTGAGGAAATACGGATTTTGTAAGGGTGAAATTCGGGATTTGGTTGTTTTCAGTTTTTTAAGAACTGATCGACTCACGTGA 1023 55.03 MERLLSEIRPSPALSETPNSPHPPTPPASPVPATPQKSSPPPILPPPSRSLSPKIWTPKRTLALPCTDPSPPYSPLPKSRLPAARRRIWLGTRGATGLGRSQEQNRAAFSSAAQPMKSSMSVRSSGRRVIAMAGCDVFWFCRRPVADQFRTIDTTFSPKASENNCPPFRSMNSSRISVRQFNLSDADDFLRWAGDDRVTRYLRWNTITSKEEAFTYLEKVAIPHPWRRSICLDGRSVGYVSVKPESEEKCRAHISYAVAAEHWGRGIATIALRAAIPAALREFPEVVRVQALVEVENEGSQRVLEKLGFCREGLLRKYGFCKGEIRDLVVFSFLRTDRLT 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23830652 23835423 - Lsi05G016150.1 Lsi05g01615 664107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01615 340 CDD NAT_SF 230 276 - -
Lsi05g01615 340 Pfam Acetyltransferase (GNAT) domain 175 309 IPR000182 GO:0016407
Lsi05g01615 340 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 171 337 - -
Lsi05g01615 340 MobiDBLite consensus disorder prediction 1 54 - -
Lsi05g01615 340 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 171 334 IPR016181 -
Lsi05g01615 340 Gene3D - 169 340 - -
Lsi05g01615 340 MobiDBLite consensus disorder prediction 16 52 - -
Lsi05g01615 340 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 176 335 IPR000182 GO:0016407
Lsi05g01615 340 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 171 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01615 - - - cmax:111480065 313.538
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01615 Lsi-Chr5:23830652 Lsi06g00198 Lsi-Chr6:2165519 4.11E-59 dispersed
Lsi05g01615 Lsi-Chr5:23830652 Lsi05g01616 Lsi-Chr5:23832999 4.33E-50 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g524 . . . . . Bpe14g01195 . . . . . Cma14g01719 . Car14g01552 . . . . . . . . . . . . . . . . . . . . . Lsi05g01615 . . Cme06g00598 . . . . . Bpe13g00601 . . . . . . . . . . . . . . . . . . Cla05g00531 Cam05g0582 Cec05g0592 Cco05g0590 Clacu05g0579 Cmu05g0549 Cre05g0618 . Csa03g01314 Chy06g00566 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003175 1 1 0 1 1 2 0 2 2 2 2 2 1 2 1 0 2 0 0 2 2 5 2 2 2 2 2 2 3 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25394 PF13302 Acetyltransf_3 1.40E-21 CL0257 Lsi TR