Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01616 ATGGCAATTACTCTCCGCCCACTAGATCTCACCGACATCGACGATTTCATGGGTTGGGCAGCGGACGAGAAAGCCGCTCGATTCTGCTCCTGGGAGCCTTACCAGGACAAATCGGAAGCCATTAAGTTCATCAACGACCAAGTCCTGTCGCACCCCTGGTACCGAGCCATATGCGTCGACGGGCGGCCGGTAGGCGCGATTTCGGTAATGGCGAATACGGCGGCGAGGGATCGGTGCAGGGGAGAGCTAGGGTACGTTTTGGGGTCCAAATTTTGGGGGAAAGGGATCGGGACGGCGGCGGTAAAATTGGTGGCGGAGAGGATTTTTGTGGAGTGGCCGGAACTGGAGAGGCTGGAGGCGTTGGTGGATGTGGAGAATTTGGCGTCTCAGAGAGTGCTGGAGAAGGCCGGATTTCAGAGAGAAGGCGTTCTAAGGAAATATGGAGTGTTGAAAGGGAAAACTAGGGATTTTGTTATGTTTAGTTTTCTTTCAACTGATCTTCAATCGTAA 510 53.33 MAITLRPLDLTDIDDFMGWAADEKAARFCSWEPYQDKSEAIKFINDQVLSHPWYRAICVDGRPVGAISVMANTAARDRCRGELGYVLGSKFWGKGIGTAAVKLVAERIFVEWPELERLEALVDVENLASQRVLEKAGFQREGVLRKYGVLKGKTRDFVMFSFLSTDLQS 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23832999 23833508 + Lsi05G016160.1 Lsi05g01616 664108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01616 169 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 3 156 IPR000182 GO:0016407
Lsi05g01616 169 CDD NAT_SF 56 107 - -
Lsi05g01616 169 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 3 163 IPR016181 -
Lsi05g01616 169 PANTHER - 2 166 - -
Lsi05g01616 169 Pfam Acetyltransferase (GNAT) domain 3 139 IPR000182 GO:0016407
Lsi05g01616 169 Gene3D - 2 169 - -
Lsi05g01616 169 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 2 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01616 - - - csv:101205310 316.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01616 Lsi-Chr5:23832999 Lsi06g00198 Lsi-Chr6:2165519 6.08E-46 dispersed
Lsi05g01615 Lsi-Chr5:23830652 Lsi05g01616 Lsi-Chr5:23832999 4.33E-50 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g525 . . . . . . . . . . . Cma14g01720 . . . . Cpe03g01444 . . . . . . . . . . . . . . . . . . Lsi05g01616 . . . . . . . . . . . . . Cmo14g01760 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006036 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 5 1 2 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25395 PF13302 Acetyltransf_3 1.90E-24 CL0257 Lsi TR