Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01618 ATGAGAATGGAATATACAAGGATGGTGATGGGTCTAGTTGCAGTTATTGTTGCTGTGCACTGGGCAGGAGCAGCCGCACAGTCGGACTGTACAAATGTGCTGATCAGCTTGTCGCCGTGCCTGAATTACATTACAGGGAACTCCTCTACCCCATCACAAGCATGCTGCACACAGCTTGCAAGTGTTGTCCGCTCACAACCACAGTGCTTGTGCCAGGTCCTGAATGGTGGTGGCTCGTCACTTGGGGTGAATATCAACCAAACGCAGGCCCTGGCTCTGCCCCGAGCTTGCAATGTTCAGACTCCTTCTATCAGCAGCTGCAATGTTGATTCTCCCACCGGCTCTCCAGCAGGAGCACCAGACTCTTCAAACAATGTTCCTTCAGTTCATTCACACGGCCAATTAAAGTACCTAACTGCTTGTGCAGGAACTGGATCTAAGACTGTTCCATCAACAGACAGTGGCTCATCAGACGGAAGCTCCATCCATTTGTCAAAACCTCTACTGTTCTCCATCTTGTTGGCTTCTACATATGCTTCAGCTTTCAAGTTGTACTGA 558 49.46 MRMEYTRMVMGLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASVVRSQPQCLCQVLNGGGSSLGVNINQTQALALPRACNVQTPSISSCNVDSPTGSPAGAPDSSNNVPSVHSHGQLKYLTACAGTGSKTVPSTDSGSSDGSSIHLSKPLLFSILLASTYASAFKLY 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23842001 23844212 - Lsi05G016180.1 Lsi05g01618 664110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01618 185 MobiDBLite consensus disorder prediction 108 130 - -
Lsi05g01618 185 PRINTS Plant phospholipid transfer protein signature 29 45 IPR000528 GO:0006869|GO:0008289
Lsi05g01618 185 PRINTS Plant phospholipid transfer protein signature 50 64 IPR000528 GO:0006869|GO:0008289
Lsi05g01618 185 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Lsi05g01618 185 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 110 IPR036312 -
Lsi05g01618 185 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 8 179 - -
Lsi05g01618 185 SMART aai_6 30 107 IPR016140 -
Lsi05g01618 185 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 8 179 IPR043325 -
Lsi05g01618 185 Pfam Probable lipid transfer 18 107 IPR016140 -
Lsi05g01618 185 Gene3D - 27 104 IPR036312 -
Lsi05g01618 185 CDD AAI_LTSS 37 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01618 - - - csv:101204822 297.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01618 Lsi-Chr5:23842001 Lsi09g01309 Lsi-Chr9:20937969 1.56E-39 dispersed
Lsi05g01618 Lsi-Chr5:23842001 Lsi05g01619 Lsi-Chr5:23844117 3.14E-06 tandem
Lsi02g00243 Lsi-Chr2:2055911 Lsi05g01618 Lsi-Chr5:23842001 6.30E-08 transposed
Lsi03g00775 Lsi-Chr3:11107907 Lsi05g01618 Lsi-Chr5:23842001 2.69E-17 transposed
Lsi05g00430 Lsi-Chr5:5462494 Lsi05g01618 Lsi-Chr5:23842001 1.16E-10 transposed
Lsi06g00432 Lsi-Chr6:4726013 Lsi05g01618 Lsi-Chr5:23842001 7.53E-16 transposed
Lsi07g01337 Lsi-Chr7:19546833 Lsi05g01618 Lsi-Chr5:23842001 5.75E-07 transposed
Lsi09g00967 Lsi-Chr9:12701520 Lsi05g01618 Lsi-Chr5:23842001 8.03E-11 transposed
Lsi05g00944 Lsi-Chr5:16567978 Lsi05g01618 Lsi-Chr5:23842001 1.50E-25 wgd
Lsi05g01618 Lsi-Chr5:23842001 Lsi09g01308 Lsi-Chr9:20937355 1.04E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g528 . . . . . Bpe14g01197 . . . . . Cma14g01723 . Car14g01554 . Cpe08g00270 Cpe03g01446 . . . . . . . Cla06g00595 Cam06g0634 Cec06g0637 Cco06g0640 Clacu06g0620 Cmu06g0613 Cre06g1381 Cone14ag0860 Cone15ag0858 . . Lsi05g01618 . . . . . . . . . . . . Cmo06g01400 Cmo14g01762 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77