Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01621 ATGACAGATGAGAATTCTAAGAAAAGCAAGCTCTCATGGTCTAAGAAAATGGTCAGAAAGTGGTTCAATATTAGGTGCAAAAGCGAGGATTTTCAAGCGGACGATGTTGCTTATAGAGGAAGTGAAATGGATTACAGAAGCAGCAGCTTCTCAGAGAGAGAACCATGCACCATCAAGAAAAGCAAAACAGAGAAATTCAGCAAAAATGGCGAGCAGGGGCGGCGAGGGAAGATGAATCTTGACCATCCTCGTATTATAGATGTGCAGAACTATAGCATTTTTGTTGCTACATGGAACGTGGCTGGAAGATCTCCTCCTAACAATCTAAATCTGGATGATTGGCTTCAATCCTCACCCCCTGCAGATATTTATGTTCTTGGATTTCAGGAGATAGTGCCATTGAATGCTGGTAATATACTGGGTGCAGAAGACAATGGCCCTGCTAAAAAATGGCAGGCTCTCATTCGAAAGACTCTAAACAATCTTCCGGGAACGAGTGGTGGTAATGCGTGTTATACGCCTTCTCCAATTCCGAAACCCATTGTGGAAATAAATGCAGATTTTGAGGGGTCTGCTAGGCAGAAGAATTCATCTTTCTTCCATCGCCGATCATTTCAAACAACCAACAGCTGGAGAATGGACAATGATCCTTCAATACCACAGCCACGGCTCGATCGAAGATTCAGTGTATGCGACCGTGTTATCTTCGGTCATCGGTCAAGTGATTTTGATCCTAACTTCAGATGGGGTCACAGGCCAAGTGATTACTGCAGACCAAGCGACTTCTCAAGACCAAGTGACTATTCCAGGTCCAGTGACTTTTGCAGGCCAAGTGACTACTCTAGGCCGAGCGACTTTTGCCGGCCAAGTGACTTCTCGAGGCCTAGTGACTGCTCACGATGGGGTTCGTCAGACGATGATAATGTTCCGTGGGAGTCACCAAGCACTGTTTTATTTTCACCAATGTCCCATGGTGGTTCTTCATCCCAGGATGGTGGATATAGAATGCCAGGACATTCAAGATATTGCTTAGTTGCAAGCAAACAAATGGTTGGCATATTTCTCACAATATGGGTAAAAAGTGACTTGAGGGAACATGTGCGAAACATGAAAGTTTCTTGTGTTGGTAGAGGATTGATGGGCTACCTTGGGAATAAGGGATCTATTTCTATCAGCATGTCTTTGCATCAGACAAGCTTTTGCTTCATTTGTACTCACTTAACATCTGGAGAGAAAGAAGGGGACGAGCTTAGAAGAAACTCAGATGTAATGGAGATACTTAAGAAGACAAGGTTCCCACGAGTTCACGGTGCAAGCAGCGACGAGAAATCCCCAGAAACAATCCTTGAGCATGATCGCGTTATTTGGCTTGGGGATTTAAACTATCGTATCGCTCTTTCATACCGTTCTGCTAAGGCGCTTGTAGAGATGCAAAACTGGAGGGCATTGCTTGAGAAGGATCAGTTACGAATAGAACAAAGACGTGGGCGTGTATTTGCTGGATGGAATGAAGGAAAGATTTACTTTCCTCCCACGTACAAGTATTCAACAAATTCAGACCGATATGCAGGGGAAGGCGCTCACCCAAAAGAGAAACGTCGTAAACCTGCTTGGTGCGATCGGATATTGTGGCATGGAGAAGGCCTCCATCAGTTATCCTATGTCCGTGGAGAGTCTAGGTTTTCAGATCATAGACCGGTTTATGGAGTGTTTTGGGCTGAGGTCGAGTCAAGCCGAGGAAGATTGAAGAAAAGCATGAGTTATTCTAGTTCCAGGATTGAGGTCGAGGAGCTTCTCCCATACGCACATGGATATACCGAACTGAACTTTTTCTGA 1836 44.77 MTDENSKKSKLSWSKKMVRKWFNIRCKSEDFQADDVAYRGSEMDYRSSSFSEREPCTIKKSKTEKFSKNGEQGRRGKMNLDHPRIIDVQNYSIFVATWNVAGRSPPNNLNLDDWLQSSPPADIYVLGFQEIVPLNAGNILGAEDNGPAKKWQALIRKTLNNLPGTSGGNACYTPSPIPKPIVEINADFEGSARQKNSSFFHRRSFQTTNSWRMDNDPSIPQPRLDRRFSVCDRVIFGHRSSDFDPNFRWGHRPSDYCRPSDFSRPSDYSRSSDFCRPSDYSRPSDFCRPSDFSRPSDCSRWGSSDDDNVPWESPSTVLFSPMSHGGSSSQDGGYRMPGHSRYCLVASKQMVGIFLTIWVKSDLREHVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICTHLTSGEKEGDELRRNSDVMEILKKTRFPRVHGASSDEKSPETILEHDRVIWLGDLNYRIALSYRSAKALVEMQNWRALLEKDQLRIEQRRGRVFAGWNEGKIYFPPTYKYSTNSDRYAGEGAHPKEKRRKPAWCDRILWHGEGLHQLSYVRGESRFSDHRPVYGVFWAEVESSRGRLKKSMSYSSSRIEVEELLPYAHGYTELNFF 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23857103 23862025 - Lsi05G016210.1 Lsi05g01621 664113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01621 611 MobiDBLite consensus disorder prediction 290 309 - -
Lsi05g01621 611 Gene3D Endonuclease/exonuclease/phosphatase 316 598 IPR036691 -
Lsi05g01621 611 SUPERFAMILY DNase I-like 339 575 IPR036691 -
Lsi05g01621 611 SUPERFAMILY DNase I-like 75 164 IPR036691 -
Lsi05g01621 611 MobiDBLite consensus disorder prediction 264 278 - -
Lsi05g01621 611 MobiDBLite consensus disorder prediction 261 285 - -
Lsi05g01621 611 Gene3D Endonuclease/exonuclease/phosphatase 71 175 IPR036691 -
Lsi05g01621 611 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 5 610 IPR045849 GO:0004445|GO:0046855
Lsi05g01621 611 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 7 5 610 - -
Lsi05g01621 611 SMART i5p_5 284 581 IPR000300 GO:0016791|GO:0046856
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01621 - - - bhj:120086190 1261.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01621 Lsi-Chr5:23857103 Lsi08g00578 Lsi-Chr8:14044178 2.85E-24 dispersed
Lsi03g02084 Lsi-Chr3:32138058 Lsi05g01621 Lsi-Chr5:23857103 1.37E-23 transposed
Lsi04g00747 Lsi-Chr4:6952330 Lsi05g01621 Lsi-Chr5:23857103 1.03E-19 transposed
Lsi07g01226 Lsi-Chr7:17886579 Lsi05g01621 Lsi-Chr5:23857103 4.53E-121 transposed
Lsi08g00617 Lsi-Chr8:14491930 Lsi05g01621 Lsi-Chr5:23857103 1.07E-120 transposed
Lsi02g02269 Lsi-Chr2:29276518 Lsi05g01621 Lsi-Chr5:23857103 0 wgd
Lsi05g00947 Lsi-Chr5:16594232 Lsi05g01621 Lsi-Chr5:23857103 0 wgd
Lsi05g01621 Lsi-Chr5:23857103 Lsi09g01303 Lsi-Chr9:20888140 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g531 Blo01g00119 . . . . Bpe14g01201 . Bma05g01102 . . Cma06g01394 Cma14g01727 Car06g01202 Car14g01558 . Cpe08g00272 Cpe03g01450 Bhi01g00786 Tan10g0815 . Lac12g2261 Hepe05g1571 . . . . . . . . . . . Cone7ag0268 Cone4ag0256 Lsi05g01621 Csa02g01143 Chy05g00400 Cme06g00592 Blo02g00531 Blo07g00227 Bda11g00587 Bda13g00109 Bpe05g00894 Bpe13g00597 Bma02g00832 Bma06g01563 . Cmo06g01398 Cmo14g01766 . . . . . . . . . . . . . Cla05g00524 Cam05g0577 Cec05g0587 Cco05g0585 Clacu05g0573 Cmu05g0543 Cre05g0612 . Csa03g01308 Chy06g00561 Cme05g00471
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000262 3 9 4 3 4 4 7 4 4 4 4 4 7 4 4 7 4 8 7 4 4 4 4 4 4 4 4 12 12 2 153