Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01626 ATGGATTCGAAAGGAAATGATATGGGGGGTACTGCGATCCCAAAGGAGACACAGGGCCAGGATAGAACTCTGAACTCAAAGGTGGCTGGTATGGGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGATATGATTGATTTGAAAACTCTAGATATGCAGCTAGAGAAGCACTTGAGCCGTGTCTGGTCAAAGAGCATTGAGAATCAAAGGCCTAAGGAGGTGTGGGAGATTGATTTGTCTAAACTTGACATCATAAAGGAAGTTGCTCAAGGGACTTACGGAACAGTATACCAGGGTACATATGACAATCAAGTTGTTGCAGTGAAGGTATTGGACTGGGGGGAGGAGGGTCTAGCCACAACGGCTGAAACCGCTGCTTTGCGGGCATCATTTCGGCAAGAGTTTGTCGGAGCCTCAATGGGAGCTACAAATCTTAAAATTCCAACGGATGATCAATATTCGTTTCCATCTAGGGCCTGTTGTGTTGTTGTTGAGTTTGTTTCTAGTGGGACATTAAAACAACACTTGATTAGATACTGTAGGAAGAAACTTTGCTTTAGGGATGTGATGAAATTAGCTTTGGATCTCTCTAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGATGTCGGGTGACAACACTGTCAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCAAGAGATATGACTGGGGAAACTGGTACTCTTGGATACATGGCCCCAGAGGTTCTTGAAGGGAAGCCGTACAATAGAAGATGTGATGTCTATAGCTTTGGCATCTGCTTGTGGGAAATTTACTGCTGTGATATGCCATACGCTGATCTTAGTTTCGCTGACGTCTCATCTGCAGTTGTTCGACAGAATCTGCGGCCCAGTATCCCGAGATGCTGTCCAAGTTCTCTGGCAAATGTGATGAAGAAATGCTGGGATGCCAATCCAGCCAAACGCCCTGAAATGCATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAAGCAGAGGAGGGGGGATGATTTCTCCCGATCACGCTACCTGTTTCTGTTTCGGGCCTTTCCGCAAGATCCGTGGTCCATAA 1122 45.19 MDSKGNDMGGTAIPKETQGQDRTLNSKVAGMGSISSKDMIFRADMIDLKTLDMQLEKHLSRVWSKSIENQRPKEVWEIDLSKLDIIKEVAQGTYGTVYQGTYDNQVVAVKVLDWGEEGLATTAETAALRASFRQEFVGASMGATNLKIPTDDQYSFPSRACCVVVEFVSSGTLKQHLIRYCRKKLCFRDVMKLALDLSRGLSYLHSKKIVHRDVKTENMLMSGDNTVKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLEGKPYNRRCDVYSFGICLWEIYCCDMPYADLSFADVSSAVVRQNLRPSIPRCCPSSLANVMKKCWDANPAKRPEMHEVVKMLEAIDTSRGGGMISPDHATCFCFGPFRKIRGP 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23901512 23905951 - Lsi05G016260.1 Lsi05g01626 664118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01626 373 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 364 - -
Lsi05g01626 373 Pfam Protein tyrosine and serine/threonine kinase 84 342 IPR001245 GO:0004672|GO:0006468
Lsi05g01626 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Lsi05g01626 373 MobiDBLite consensus disorder prediction 1 20 - -
Lsi05g01626 373 PRINTS Tyrosine kinase catalytic domain signature 203 221 IPR001245 GO:0004672|GO:0006468
Lsi05g01626 373 PRINTS Tyrosine kinase catalytic domain signature 313 335 IPR001245 GO:0004672|GO:0006468
Lsi05g01626 373 PRINTS Tyrosine kinase catalytic domain signature 165 178 IPR001245 GO:0004672|GO:0006468
Lsi05g01626 373 PRINTS Tyrosine kinase catalytic domain signature 269 291 IPR001245 GO:0004672|GO:0006468
Lsi05g01626 373 CDD STKc_MAP3K-like 89 342 - -
Lsi05g01626 373 Gene3D Phosphorylase Kinase; domain 1 57 168 - -
Lsi05g01626 373 ProSiteProfiles Protein kinase domain profile. 83 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01626 373 Gene3D Transferase(Phosphotransferase) domain 1 169 352 - -
Lsi05g01626 373 SUPERFAMILY Protein kinase-like (PK-like) 62 342 IPR011009 -
Lsi05g01626 373 SMART serkin_6 83 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01626 373 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 1 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01392 Lsi-Chr3:24889505 Lsi05g01626 Lsi-Chr5:23901512 2.78E-145 dispersed
Lsi05g01626 Lsi-Chr5:23901512 Lsi06g01545 Lsi-Chr6:25801745 4.30E-23 dispersed
Lsi02g02266 Lsi-Chr2:29246055 Lsi05g01626 Lsi-Chr5:23901512 2.94E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83670 PF07714 PK_Tyr_Ser-Thr 6.10E-56 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01626 - - csv:101218975 638.262