Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01627 ATGGACACTCCGGAGAGGAACCAGATCGGCACTACTTCCGTCTCTAAATTTGAGGATTCCCCAGTTTTCAACTACATCAATAATCTTTCTCCGATCCAACCTGTCAAGTCCATACATACTACACAGACGTTCAACTCTCTTAGTTTTGCTTCCCTTCCTTCGGTTTTTACTTCGCCACATGCCAGTTCTTACAAGGAATCTAGATTCTTAAGAAGGCACAGTTATTCAGATCTATCAAAGCCAGACTTTTCTTCCGAAAATGGGAATAAAGTTGGCAGTGGCACTGATGGAGGTGTTACAGGGAATGTGGCTAAATTGCAGGATAACTCTAGTCCACCAGATGGCAAATCTGATTCACTTTCTAATCCATCTACCGAGACGCCTTCTGAACATCCCGTGTCTACTAAAGAGGAGCCACAAGCATCTAAGAGTGATTCTTCTCGTCCAGATTGTGATCAAAAGCTACCAGATAGCGTTTTAAAATCAGGTGACGACCCGGCTTTGAGTGACCCTTGTGTTAAAAATAAATCTGGAAATGGATCATCTGAAGCTGAAGGGAATAAGCAGGTCGTAAACCACACTGAAGAAAGAGAGGGGACGGGTTATGACTGGGAAAGTTTAATTACTGAAGGTGCTGATCTTTTGATATTCAGCTCCCCCAATGGCTCGGAGGCTATCAGATTAGTTCAGAAACCATTAGACCTTGTGACAGGGTTTACATCAAGTACCTTGTCTCAGATCATGGAAAATGACAATGCCAATCTGTCAAAAATGAGAATTGTTGATTCAATAGAATCTAGTGGTGGACAGCATGAAATAGAGTTTTTGTCTTCTCAAGCTGGAGAGGCTTGTGAACTAAAAGAGATGGACCAAGGAATAGATAGCCTTTCCTTTCCAAATTCAAGTAACTCTATGAGTAGGGAAATAACAGATGATGAAGTGGCTAGATATATAGCAGATGATTGTAAGCCGGCATCTAATTTGTATCGGGGTATGCGGAGGCGCTGTCTGGACTTTGAGGCTGCAGTCAGTCGAAGAAAAACCTTAGAAGATGGTTCAAATGGTGGTTCTGTGGCCGCACATCCAGAAGAGAAGACGACATCCATGGATAAACAACTTGTCCCGTATAAATCTGGTGGTGTTGCAACTAGATGCGTTTTAACTGGAATAGGTTTACACTTAAATGCTTTGGCAACAACTTCAAAGGATGCCAAAAATCTCAATCATGAAAAGTTTTCATCTGAAAGGCAACTGAATTTGCCCAATTCAAGTGCTTCATGTCATTCACCTTCAACTGGTCTGGATCCTCTCGTGACATCAGTTGTTACTGAAAGAGACATGGATCCATCAGGGAATGGAATTCAAAATGAGGAAGATGCTGCTAGGGCATCTGCATATGTGCTTGCTGAAGATTTCAATCAAAATACTGCATCACCTTGTTATCTAATGGAAGCCAAATGGTTTTGCAGGCGTAGGTTGGAACATGCTGGGGAAACTGAGTCATCATGCAAACGTTGTAACTGCAAGAAGTCCAAGTGTTTAAAACTTTACTGCGAATGCTTTGCGGCTGGTGTTTACTGTATTGAGCCATGTTCATGTCAAGATTGCTTTAACAAACCTATTCATGAAGATACCGTTCTTGCAACTCGTAAGCAGATTGAATCTCGCAATCCACTTGCATTTGCTCCCAAAGTGATCAGGAACTCGGATTCTCTTCCAGAACCTGGGGATGAGTCTAACAAAACTCCAGCATCTGCACGGCATAAAAGAGGATGCAATTGCAAGAAATCAAGTTGCCTTAAGAAATACTGTGAATGCTATCAGGGTGGTGTTGGATGCTCCATCAGTTGCAGATGTGAGGGGTGCAAAAATGCATTTGGAAGAAAGGATGGGTCCTCTCTATTAGGATTAGAAGCTGAACTAGAAGAAGAAGAAACAGAAACAAACCAAAAGAGTGTGATGGACAAAGGTCTGCAAGGCCCTGAAATCCAGAATAATGAAGAGCAGAACCCTGGTTCTGCTATTCCCTCAACTCCATTACAACTTTCCAGGCAATTGGTTCCCTTGCCGTTCTCTTCAAGAAGCAAGCCACTGCGTTCTTCTTTTCTAAATGTTGGATCCTCATCTGGATTTTATGCGGGCCACAAACTTGAAAAGCCAAATATCCTCCGAGCCCAACCGGATCTTGGGAAAAATACTAAGCCTGTTTCGGAAGATGAAATGCCAGATATTCTTCGTGGCGATTGCTCTCCTGGTGCAGGCATGAAGACTGGTTCCCCCAATAGCAAGAGGATATCTCCTCCTCAGAGCGACTTCGGCTTATCGCCACTGCCACGAACGGGTCGGAAATTGATATTGCAGTCAATTCCATCTTTCCCTTCTCTCACCCCTCAACACTGA 2400 43.17 MDTPERNQIGTTSVSKFEDSPVFNYINNLSPIQPVKSIHTTQTFNSLSFASLPSVFTSPHASSYKESRFLRRHSYSDLSKPDFSSENGNKVGSGTDGGVTGNVAKLQDNSSPPDGKSDSLSNPSTETPSEHPVSTKEEPQASKSDSSRPDCDQKLPDSVLKSGDDPALSDPCVKNKSGNGSSEAEGNKQVVNHTEEREGTGYDWESLITEGADLLIFSSPNGSEAIRLVQKPLDLVTGFTSSTLSQIMENDNANLSKMRIVDSIESSGGQHEIEFLSSQAGEACELKEMDQGIDSLSFPNSSNSMSREITDDEVARYIADDCKPASNLYRGMRRRCLDFEAAVSRRKTLEDGSNGGSVAAHPEEKTTSMDKQLVPYKSGGVATRCVLTGIGLHLNALATTSKDAKNLNHEKFSSERQLNLPNSSASCHSPSTGLDPLVTSVVTERDMDPSGNGIQNEEDAARASAYVLAEDFNQNTASPCYLMEAKWFCRRRLEHAGETESSCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRNSDSLPEPGDESNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSSLLGLEAELEEEETETNQKSVMDKGLQGPEIQNNEEQNPGSAIPSTPLQLSRQLVPLPFSSRSKPLRSSFLNVGSSSGFYAGHKLEKPNILRAQPDLGKNTKPVSEDEMPDILRGDCSPGAGMKTGSPNSKRISPPQSDFGLSPLPRTGRKLILQSIPSFPSLTPQH 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23924031 23928949 + Lsi05G016270.1 Lsi05g01627 664119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01627 799 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 799 - -
Lsi05g01627 799 MobiDBLite consensus disorder prediction 76 198 - -
Lsi05g01627 799 MobiDBLite consensus disorder prediction 413 431 - -
Lsi05g01627 799 ProSiteProfiles CRC domain profile. 502 627 IPR005172 -
Lsi05g01627 799 MobiDBLite consensus disorder prediction 131 159 - -
Lsi05g01627 799 MobiDBLite consensus disorder prediction 748 799 - -
Lsi05g01627 799 SMART CXC_2 501 542 IPR033467 -
Lsi05g01627 799 SMART CXC_2 587 628 IPR033467 -
Lsi05g01627 799 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 504 539 IPR005172 -
Lsi05g01627 799 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 590 625 IPR005172 -
Lsi05g01627 799 MobiDBLite consensus disorder prediction 755 769 - -
Lsi05g01627 799 MobiDBLite consensus disorder prediction 411 431 - -
Lsi05g01627 799 MobiDBLite consensus disorder prediction 347 367 - -
Lsi05g01627 799 MobiDBLite consensus disorder prediction 80 130 - -
Lsi05g01627 799 MobiDBLite consensus disorder prediction 174 188 - -
Lsi05g01627 799 MobiDBLite consensus disorder prediction 567 591 - -
Lsi05g01627 799 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 799 IPR044522 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01627 - - - csv:101203694 1421.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01627 Lsi-Chr5:23924031 Lsi11g00253 Lsi-Chr11:2562915 4.82E-31 dispersed
Lsi05g01627 Lsi-Chr5:23924031 Lsi09g01305 Lsi-Chr9:20917935 4.58E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g539 . Blo12g00335 Bda03g00875 . . Bpe14g01204 Bma04g00774 . . . Cma06g01388 Cma14g01734 Car06g01197 Car14g01564 Sed02g1334 Cpe08g00275 Cpe03g01455 Bhi01g00774 Tan10g0801 Cmetu07g2311 . Hepe05g1577 . Lcy11g1571 . . . . . . . . Cone15ag0860 Cone7ag0270 Cone4ag0261 Lsi05g01627 . . Cme06g00586 Blo02g00527 Blo07g00229 Bda11g00591 Bda13g00106 . Bpe13g00593 . Bma06g01566 . Cmo06g01394 Cmo14g01773 . . . . . Cpe17g00155 . . . . . . . Cla05g00518 Cam05g0569 Cec05g0581 Cco05g0579 Clacu05g0566 Cmu05g0537 Cre05g0606 . Csa03g01301 Chy06g00555 Cme05g00473
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003693 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 7 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25396 PF03638 TCR 2.00E-11 No_clan Lsi TF