Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01629 ATGGCAACCTTGATGCATTCTGAATCTCGACGCTTATATTCTTGGTGGTGGGATAGCCATATTAGCCCCAAAAATTCAAAATGGCTACAGGAGAATCTTACAGACATGGATGCCAAAGTAAAAGCAATGATCAAACTCATTGAAGAAGATGCAGACTCCTTTGCAAGAAGAGCAGAAATGTACTATAAGAAACGTCCAGAGCTTATGAAATTAGTTGAGGAATTCTACCGAGCCTACCGTGCTTTAGCTGAAAGATATGACCATGCAACTGCAGAGCTTCGTCATGCACATAAAACCATGGCTCAAGCATTTGACAACCAAATGCCTCCTTTTATGTTTTCTGATGAGTCTTCTGTTTCTGAAGCTGAATCCCACACACCAGAAATCCACCTCCCAAATCATGCGCTGCATGACAAAGATGACTTGCACAAAGAGTTGGGGAGTTCGTTGTCAACGAACCAACATCCATTAAGAATGAAAGGAGATAATGCTGGGGAATCTAATTCTCGTGCAAGTAAAGGGGGTTTGAAACAGCTCAATGAGATGTTTGAATCAAGAAAAAATGTGCCAGAAAATTTAGAGGTTAGTGAGGGAAGCAATGAACCGCAATTTGTTTGTCATGAAGGTGAATTCGATGACCATAACCACCAAAATACAGTACCCCCTCAGTTATCAAGGAAAATTAATGATCTCAACTCTCAGGTCGTGTGTGAGTCAGAAAGTGATGAAAAATTGGATGCTGAACTTCAAAATTTAAGGAAAAGACTGAATCAGATGGAAGCTGAAAAGGAAGCTTTCTATCTTAAATACCAGAATTCTTTGGAGAAATTATCCAGCCTAGAAAATGAACTTAGTTCTGCTCAAAAAGATGCTGGTGGACTTGACGAAAGAGCAAGCAAAGCTGAAATTGAAATAAAAATATTGAAGGAAGCCCTTCTAGATCTGAAAGCAGAGAAGAATGCTGGTCTTCTACAATATAATCAATGTTTGGAAAAAATATCTAGCTTAGAAAAGCAATTATCTGTAGCCCAACAAGATGCTGAAGGACATAATGAGAGAACTGCTAAGGCAGAAATTGAAGCTCAGAACCTTGAGCAACAACTTTCCAGATTAGCAGCTGAAAAGGAGGTCAGTCTTCTTCAGTACGAGCAATGCCTAAAGAAGATATCTTCCTTAGAGAACAAAATCTCTCTTTCTGAAGATTATGCAAGAATGCTTGATGAACAAATGAAAAGTTCAGAAACTGAAGTGAAAGCACTGAAGAGAGCTCTTGTTGAACTGAATGAAGAGAAGGAAATAGCATCTCGCCAGTATGAGCAGTGCTTGGAGAAAATTGCTAAGATGGAAACTGAAATAGCTTATGCTCAAGCTGATGCAAAACGATTGAAAGGTGAACTTGTGATGGCTAATGCAAAACTGGAGACGACAGAAGAAAGGTGTGCTCATTTGGAGCAGTCGAACCATTCACTGCAGTTTGAGGCAGACAAACTTGTACAGAAAATTGCTATTAAGGATCAAGAGCTTGCAGAAAAGCAAGATGAGTTGAAGAAACTGCAGAGTCTAATGAACGACGAGCAGTCACGATTTGTACAAGTTGAGAACACTCTCCACACTCTGCAGAAGTTACATTGTCAATCTCAGGAGGAACAGAGAGCTCTGACCTTGGAGCTTAAAAATGGTCTCATGATGCTGAAGGATTTGGATATATGCAAACATGGCATGGAGGAAGAGCTTCAACGAGTTAAGGATGAAAACAAAATATTGAATGAACTGCATTTTTCTTCCAATACTTCAATGAAGAATTTAGAGGATCAATTATCTGGCTTGAAGGAGATGAAAGAGAAGCTTGAAGAGGTTGTTTCCCAAAAAGAAGAGCAGAGCAGCTTGCTTGAGAAAGAGATCCATCATTTGAGAGAAGAAATTAAGGGCTTGAGTGGAAGATACCAGGGCATAATGAGACAATTGGAGGCAGTGGGATTAGATCCTCACTCCCTTGAATCTTCTGTAAAGGAATTTCAAGAGCAAAATGCCAAGCTGAGGGAGGCCTGTGAAAAAGACAGGAACAAGATAGAAGCACTTTATGAAAAACTCAGTTATATGGATGAACTTGCAAAGGAAAATTCGATTCTCAAGGTATCTCTGGCTGAATTGAATACTGAATTGGAGAGGTTAAGAGAGAAAGTCAAGGAATCCCAGGACCTTTCCCAATTTACCCCGGAAGAAAAAACTGCTCTTGTTGCAGAGAAGTCTTCCTTACTTGCACAATTGCAGAATGTAACTGAGAATATGTTGAAACTTTTAGAGAAGAACACATTGCTGGAAGACTCCCTATCTAGTGCAAATAAAGAGCTTGAAGGTTTAAGGGCAAAATCAAAGGGATTAGAAGAATTCTGCCAGTTGCTGAAGGATGAGAGGTCCAATCTTTTGAATGAAAGAGGCGCACTGGTGGCTCAGCTTGAAAACATTGGACTGAGACTAGGAAACCTGGAAAAGAGGTTTACGAATCTAGAAGAAAAATATGCTGATCTGGAAAATGACAAAGATTCTGCCTTACATCAAGTAGAAGAATTGAGGTTTTCCCTTCTCATGGAAGAACAAGAGCATACGAGTTTCAAGCAGTCGACTGAGGCCAGACTTGCTGGTTTAGAGAACAATGTCCATAACCTACGAGAAGAAAGTAGAGTGAGCAAGGAAGAAATTGAAGATCTACTAGACAAGGCTGTGAATGCCCAGGTTGAAATCTACATATTGCAGAAGTTTGTTGAGGATTTGGAAGAGAAAAATCTTTCTTTGCTTATTGAATGTGAACAATATGAAGAGGCATCCAAGTTGTCAGATAAACTTATTGCTGAATTGGAAGGTGAAAATCTTGAGCAACAAGTTGAAGTTGAATTTATGTATAATGAAATCGATAAATTAAGAGCAGGAGTCCGTAAGGTATTAATGGCACTTCAAATTGATCAAGATTGTGGGCAGGGAAATATGAAAGAAGAGAGAGTTTTAATAGTGGATATTTTGGCCAGAATTGAGGATTTGAAAATTTCTGTGTTCAAAAACAAGGACAAGAAGCAGCAACTGCTAGTTCAGAACTCGGTTTTATTAACTCTTCTCAAGCAACTGAGTTTGGAGAGTGAAGAACTTCTATCAGAGAAAGAGAACATTGTGCAGGAGTTAAAGATCATGAAGGGCCAACTAGCAACGCATGAAAATGACAAACATGAGCTTCTGAAGATGAAAAACCAGTTGATGATGCAAGTTAGCCAGTGGGAACAGCATGAGCTACTTCTGAAGGCTGAGATTGCAACTCTAAATGAGAAGCTAATAAATTTGCAAGGGGCCTGTCTTAAGCTGGAAAAGGAGAATTGTAATGTTGCTGAAGAAAAGAAATCTTTGCTGAAGAAATTTCTGGACCTTGAAGAGGACAAGAACATTATTCAACAAGAGCAGCACAATTTAATCATCCAGGAAGTGATTGCTTTCAACATCCTAACATCAATTTTTGAAAGCTTCAAAACTGAGAAATTCTTGGAAATAGAAAAGCTTGTTCAAGATATCTGTCATCTCCAAGTGGTTAATTCTGATACAAGGGAGGAAGTTGGAAAGTTGGCAGAGAAATTTCAGTTGAAGGAAGTGGAAAATTTGCATTTAAATGGATCAGTAGAGAAATTGGCCAAGGAGCTACATGAAGCAGAAGACTTGAACGATGAACTTAACTATCAAATTTTACTTGGAAATGATTTTCTGAGGTTGAAGGCCCAAGAGCTTTCTGAAACAGAAGAGGAGCTTAAAAATTCACAGAACTTCAACATGAAATTGTCTGGGGCAGTTGCGGAGCTCAAGATGGAAGGTAAAGAATCAATGATGATCAGACACAGTCTACAGAACGAGAATCGTGAACTTTCTGAAAAGTGCTTAAGCCAGGAGAATGATATTCAATGCCTCTGTGAAGTAAATGAAAATTTAAAATCTGAAGTTGATTTGTTGAATGAGGAGGTCGAGAAATGCAAAATTAGAGAGGAGTGTCTGAGTTCAGAGCTACAGGAAAGAAGAGATGAATTTGAGCTCTGGGAGGCTGAAGCCACAACATTTTACTTTGATCTTCAAATCTCATCGATACGGGAGGTTTTATACGAACATAAGGTTCATGAACTTGCACAGGCTTGTGAAAATGCTGGGGATGAGAACGCTGCAAAAACTATGGAGATTGAACAACTCAGAGAAAGAGTGAGTTTCCTGGAAACTGAAATCAGAGAAATGGAGGCACAGTTGTCGGCATATAAGCCCGCCATAGCTTCTCTGAGGAAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAGACTAGGGATACCTGTAGAGGTTTTATAGGAGAAGAGGGCGAGGAAACCACGATTCATGTTCATCGCAAGAGCTGTAATGTCCACCACAAAGATGAGATATTGGATTTGCAGAAGATTGGGGCCATGATAAAAGCAGTTGAGAAGGCTGTGATCAAGGAAAAGGAAAAACTCAACAAAGAAGCTGACAAACATGTCAAAGACTTCAAATCAGAAGGAGCCTCACGTCAGAAAGTGACAATGAAGGAAGGGAAAGATTTGAGGGATGAAATTACTGATAATCTGAAGGCAAGAAAGAATAAACCTGACAATGGAATATTAATGAAAGATATTCCACTAGATCATGTATCGGATAGTTCTTTCCAGAGAAGAAGCAAAAGGGAAAGTAGTGAAACCAATGATCAAATGCTTAAGTTGTGGGAAACTGCTGAGCAGGATTGTGACCAGAATTTGATTGATAGCTCGCCACCACAAAGCCCGCCAGACCCACAAATCGAGTACCCGCAGTTGGAAATTGTAGAACATAAGAGTCCAGATTTTTCTTCAGAACTGCAAGCAGAGAAGGAGTTGAGCATTGATAGATTAGAGCTATCGCCCAGCATTAGAGAACGAATTCGAAGAGGCCGAAAAGGAAAGATTTTAGAGAGACTTGATTCAGATGTCATTCAGTTGACAGGTCTTCTAACAAGCATTCAAGATTTGAAAAAGAGAATTGAATTGAACACCCTTGAAATGGCTAGAAACAATGAATATGACACGGTCGAGAAACATATAAAAGAAGTCGAGGAAGCCATTTTTCAGCAAGTAAATATCAATGGTCAACTGAAGCAGAATTTGGAACGCAGTCCCTCATCTTTCGAGCGAAGACCTTCAGTCGAACTCGAGGCAACTGGAAACATCCCCTTAAGCAAACTAACAGAGCAGGCACAAAGAGGATCCGAGAAGATAGGAAAACTACAGTTCGAGGTACAGAACATTCAGCGCGTTGTGCTGAAACTCGAAGCGGAGAAGAAAAGAAAAGGGAAGAACAGATTCTCCAAGAGTAAACCCGGTGTTATTCTGAGAGACTTCATCTACAGAAGTGGAAAACGCAGCGAAAGACGAAAGAAGCCATGCTCTTGTGGATGCACAAGACCTACTACTCATGGAGACTGA 5493 39.81 MATLMHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATAELRHAHKTMAQAFDNQMPPFMFSDESSVSEAESHTPEIHLPNHALHDKDDLHKELGSSLSTNQHPLRMKGDNAGESNSRASKGGLKQLNEMFESRKNVPENLEVSEGSNEPQFVCHEGEFDDHNHQNTVPPQLSRKINDLNSQVVCESESDEKLDAELQNLRKRLNQMEAEKEAFYLKYQNSLEKLSSLENELSSAQKDAGGLDERASKAEIEIKILKEALLDLKAEKNAGLLQYNQCLEKISSLEKQLSVAQQDAEGHNERTAKAEIEAQNLEQQLSRLAAEKEVSLLQYEQCLKKISSLENKISLSEDYARMLDEQMKSSETEVKALKRALVELNEEKEIASRQYEQCLEKIAKMETEIAYAQADAKRLKGELVMANAKLETTEERCAHLEQSNHSLQFEADKLVQKIAIKDQELAEKQDELKKLQSLMNDEQSRFVQVENTLHTLQKLHCQSQEEQRALTLELKNGLMMLKDLDICKHGMEEELQRVKDENKILNELHFSSNTSMKNLEDQLSGLKEMKEKLEEVVSQKEEQSSLLEKEIHHLREEIKGLSGRYQGIMRQLEAVGLDPHSLESSVKEFQEQNAKLREACEKDRNKIEALYEKLSYMDELAKENSILKVSLAELNTELERLREKVKESQDLSQFTPEEKTALVAEKSSLLAQLQNVTENMLKLLEKNTLLEDSLSSANKELEGLRAKSKGLEEFCQLLKDERSNLLNERGALVAQLENIGLRLGNLEKRFTNLEEKYADLENDKDSALHQVEELRFSLLMEEQEHTSFKQSTEARLAGLENNVHNLREESRVSKEEIEDLLDKAVNAQVEIYILQKFVEDLEEKNLSLLIECEQYEEASKLSDKLIAELEGENLEQQVEVEFMYNEIDKLRAGVRKVLMALQIDQDCGQGNMKEERVLIVDILARIEDLKISVFKNKDKKQQLLVQNSVLLTLLKQLSLESEELLSEKENIVQELKIMKGQLATHENDKHELLKMKNQLMMQVSQWEQHELLLKAEIATLNEKLINLQGACLKLEKENCNVAEEKKSLLKKFLDLEEDKNIIQQEQHNLIIQEVIAFNILTSIFESFKTEKFLEIEKLVQDICHLQVVNSDTREEVGKLAEKFQLKEVENLHLNGSVEKLAKELHEAEDLNDELNYQILLGNDFLRLKAQELSETEEELKNSQNFNMKLSGAVAELKMEGKESMMIRHSLQNENRELSEKCLSQENDIQCLCEVNENLKSEVDLLNEEVEKCKIREECLSSELQERRDEFELWEAEATTFYFDLQISSIREVLYEHKVHELAQACENAGDENAAKTMEIEQLRERVSFLETEIREMEAQLSAYKPAIASLRKDVESLKHIVLPQTRDTCRGFIGEEGEETTIHVHRKSCNVHHKDEILDLQKIGAMIKAVEKAVIKEKEKLNKEADKHVKDFKSEGASRQKVTMKEGKDLRDEITDNLKARKNKPDNGILMKDIPLDHVSDSSFQRRSKRESSETNDQMLKLWETAEQDCDQNLIDSSPPQSPPDPQIEYPQLEIVEHKSPDFSSELQAEKELSIDRLELSPSIRERIRRGRKGKILERLDSDVIQLTGLLTSIQDLKKRIELNTLEMARNNEYDTVEKHIKEVEEAIFQQVNINGQLKQNLERSPSSFERRPSVELEATGNIPLSKLTEQAQRGSEKIGKLQFEVQNIQRVVLKLEAEKKRKGKNRFSKSKPGVILRDFIYRSGKRSERRKKPCSCGCTRPTTHGD 1830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23937429 23945715 + Lsi05G016290.1 Lsi05g01629 664121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01629 1830 Coils Coil 819 860 - -
Lsi05g01629 1830 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 1830 - -
Lsi05g01629 1830 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Lsi05g01629 1830 Coils Coil 1245 1265 - -
Lsi05g01629 1830 Coils Coil 326 381 - -
Lsi05g01629 1830 Coils Coil 1388 1422 - -
Lsi05g01629 1830 Coils Coil 1128 1148 - -
Lsi05g01629 1830 Coils Coil 949 969 - -
Lsi05g01629 1830 MobiDBLite consensus disorder prediction 1514 1533 - -
Lsi05g01629 1830 Coils Coil 1037 1071 - -
Lsi05g01629 1830 Coils Coil 872 906 - -
Lsi05g01629 1830 Coils Coil 1490 1518 - -
Lsi05g01629 1830 Gene3D - 563 706 - -
Lsi05g01629 1830 Coils Coil 242 318 - -
Lsi05g01629 1830 SUPERFAMILY Tropomyosin 225 447 - -
Lsi05g01629 1830 Coils Coil 1290 1338 - -
Lsi05g01629 1830 Coils Coil 564 591 - -
Lsi05g01629 1830 Coils Coil 749 790 - -
Lsi05g01629 1830 Coils Coil 1216 1240 - -
Lsi05g01629 1830 Coils Coil 403 535 - -
Lsi05g01629 1830 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Lsi05g01629 1830 Coils Coil 599 647 - -
Lsi05g01629 1830 MobiDBLite consensus disorder prediction 146 172 - -
Lsi05g01629 1830 PANTHER PROTEIN NETWORKED 4A 1 1830 - -
Lsi05g01629 1830 Coils Coil 700 734 - -
Lsi05g01629 1830 Coils Coil 669 696 - -
Lsi05g01629 1830 Coils Coil 1100 1120 - -
Lsi05g01629 1830 Coils Coil 921 941 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01629 - - - csv:101218746 3096.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00240 Lsi-Chr3:2978822 Lsi05g01629 Lsi-Chr5:23937429 4.23E-10 dispersed
Lsi02g00035 Lsi-Chr2:378206 Lsi05g01629 Lsi-Chr5:23937429 1.85E-12 transposed
Lsi02g01205 Lsi-Chr2:15475141 Lsi05g01629 Lsi-Chr5:23937429 2.23E-21 transposed
Lsi05g00780 Lsi-Chr5:11168836 Lsi05g01629 Lsi-Chr5:23937429 3.92E-25 transposed
Lsi02g02263 Lsi-Chr2:29191813 Lsi05g01629 Lsi-Chr5:23937429 2.67E-82 wgd
Lsi05g00949 Lsi-Chr5:16618508 Lsi05g01629 Lsi-Chr5:23937429 1.34E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44