Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01631 ATGAAAACCTTAAGCTCCCCTCTCTCAAAATCTCTCATCATCATCTCCATCCTCGTCATCCTCTCCCAACCTTCCCATCAAGCAACTCCACCGCCACCGTCGCCATTTCTCCCGAACCCCAGACTCCTTAAGGCCTACTCCGCTCTCCAAGCTTGGAAACATGCCATCACCGCCGACCCAACCAACTTCACCGCCGATTGGTACGGCCCCAATGTCTGCAACTACTCTGGTGTCTTCTGCGCCTCTGCCCCCGACGACCCCGACATCCTCACCGTCGCCGGGATCGATCTCAACCACGCCAACCTCTCGGGCACTCTGCCCGATGACCTCGGCCTCCTGACCGACCTTGCTCTGTTTCACATCAACTCTAATCACTTCTGCGGCACCATCCCCAATTCCTTCCGGTGCCTCACTCTTCTCTTTGAGCTCGATATCAGCAACAATGACTTCTCCGGCGAATTCCCCTCTGTAATTCTCTCTCTAACAGCTCTCAAATTCCTCGACATTCGATTCAATAAATTCCATGGCGATCTCCCTTCTCCCCTGTTTGACTTGAAACTAGATGCTCTGTTCATCAACAACAATGATTTCAAATTTTCCCTACCGGAAAACATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACACCATCAATGGCTGCCTCCCCTCTACTTTATCCAATATGAACAACACACTCAATGAAATTATAATCACGAATAGTGGGTTGATTGGGTGTTTGCCACCGGAAATTGGGTTGTTAAGCAATCTCACCGTCTTCGATGTTAGTGACAACAATCTTGTTGGACCGTTGCCTGAGACGATGGCTGGAATGAAGAAACTGGAGCAGCTAAATGTCGCACATAACCAACTATCCGGCGAAATTCCGGCGAGTATTTGTTCGTTGCCGAAATTGCAGAATTTCACTTACTCGTATAATTTCTTCTGCAGTGAACCACCGGTGTGCCTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCAGAAAGGCCATTGCAACGTTCGCCGGAGGAATGCAAAGCTTTCTACTCTTTCCCTGTTGATTGCGGTATCTTTGGGTGTACTCGTCGGCCGCCACCGCCTCCGCCGCCATCTTACTAG 1131 49.6 MKTLSSPLSKSLIIISILVILSQPSHQATPPPPSPFLPNPRLLKAYSALQAWKHAITADPTNFTADWYGPNVCNYSGVFCASAPDDPDILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNHFCGTIPNSFRCLTLLFELDISNNDFSGEFPSVILSLTALKFLDIRFNKFHGDLPSPLFDLKLDALFINNNDFKFSLPENIGNSPVSVLVFANNTINGCLPSTLSNMNNTLNEIIITNSGLIGCLPPEIGLLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPPVCLKLQASDDQKNCLPERPLQRSPEECKAFYSFPVDCGIFGCTRRPPPPPPPSY 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23953552 23954682 - Lsi05G016310.1 Lsi05g01631 664123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01631 376 SUPERFAMILY L domain-like 46 326 - -
Lsi05g01631 376 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 15 372 - -
Lsi05g01631 376 Pfam Leucine rich repeat 234 293 IPR001611 GO:0005515
Lsi05g01631 376 Gene3D Ribonuclease Inhibitor 44 206 IPR032675 -
Lsi05g01631 376 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 15 372 - -
Lsi05g01631 376 Pfam Leucine rich repeat N-terminal domain 47 80 IPR013210 -
Lsi05g01631 376 Gene3D Ribonuclease Inhibitor 207 335 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01631 Lsi-Chr5:23953552 Lsi11g00270 Lsi-Chr11:2740543 6.11E-149 dispersed
Lsi05g01631 Lsi-Chr5:23953552 Lsi06g00231 Lsi-Chr6:2653715 4.85E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01631 - - cmos:111457817 653.284