Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01632 ATGGGTAATGCAGATTTTGAATGCCCTCACAGAGTGTCCATTCCTCCAAAAAAGCCCTTCTTAGACTCCTTATCTTCCAACCTCAAAGAAACCTTCTTCCCCGATGACCCTTTCAAACAATTCAAGAACCAATCTTTACCGACCCAAATTCTTCTCTGGCTTAAATACTTCATTCCCTTTCTCGAATGGGCTCCTCGTTACACTTTCGACTTCTTCAAAGCCGACCTAGTCGCCGGTATCACCATCGCCAGTTTAGCTGTTCCTCAGGGTATCAGCTACGCCAATCTCGCTAGCATCCCTCCCATCATCGGACTTTATTCGAGCTTCATCCCACCGTTGATATACGCCATGTTTGGAAGCTCGAAAGATATAGCAGTGGGGACGGTCGCGGTAGCGTCGTTGCTTATGTCTGCCATGTTGGGGAAGGAAGTCAACCCGATAGAGCATCCGAAGCAATACGTTCAATTGGTTTTCACTGCCACCTTCTTTGCGGGAGTGTTTCAAGCTTCTCTCGGGTTTCTCAGGTTAATTTTTAGCTCGGATACCAAGTTAAAACGTGACATACTGGGGTTCATGGGTGGTGCAGCGACGGTGGTTTGTCTTCAGCAACTTAAAGGCATAACGGGATTAGTTCATTTTACGCATGAGACTGATATTGTATCCGTTATGCGTTCTCTTTTCTCTCAGATTCACAAGTGGAGATGGGAAAGTATTGTGTTGGGTTGCTGTTTTCTCTTCTTTCTCCTCCTCACTAGATACTTGGTAATCATCTTGGGAAGTCTTCTCGTTTACTTAACCCACGCTGAAAAGCATGGAGTTCAAGTGATTGGGAATTTGAAGAAAGGGTTGAATCCCCCTTCTGTATCTGATTTAGTATTTGGATCCCCTCATCTCGCCATTGCCATCAAAACAGGGATCATCATCGGAATCATTGGCCTCGCTGAAGGAGTTGCAGTGGGAAGAAGTTTTGCTGCTTTTAAGAACTACCACATTGATGGAAACAAGGAAATGATAGCATTTGGGATGATGAACATTGTTGGTTCTTGTACTTCTTGCTACCTTACTGCAGGGCCATTTTCGAGGACTGCAGTGAATTTCAATGCAGGATGTAAAACTGCGGTCTCGAATATTGTCATGGCAATTGCTCTGATGATCACTCTGTTGTTTTTAACGCCATTTTTTCATTACACACCCCTGGTGGTGCTTTCCTCCATAATCATCACTGCCATGCTTGGCCTAATCAACTATGAAGAAGTCATCCACCTTTGGAAAATCGACAAATTTGACTTTGTCGTCTGCCTCGGTGCATATATTGGTGTCGTCTTTGGAAGCGTTGAAACAGGCTTGATCGTTGCGATTACACTCTCTTTGTTAAGGGTGCTTCTCATCATCGCGAGGCCAAGAACTTTAGTATTAGGCAACATTCCCAACTCCACAATTTACAGAAGCGTTGATCAATACCCAACAGCCAACAATGTGCCTGGAATTCTCATCCTCCAATTGGAGGCCCCAATCTATTTTGCCAACTCAAACTACCTGAGAGAAAGGCTTTCAAGGTGGATTACAGACAAAGAAGATAGGATAAAATCATCAGGAGAAACCAGCTTGCAGTACATAATTCTAGACATTTCCGGCGTAAGTAGCATTGACTCAAGTGGAATCAGCATGCTCGAAGAGGTTAAGAAGAGTACTGAAAGAAGGGGTCTCAAACTTGTACTAGCAAATCCAAGAAGTGAAGTGATCAAAAAGTTAAACGAGGCGAAGTTCATCGAGGCGATCGGACAGGAATGGATCTATCTTACAGTGGGAGAGGCTGTAACAGCCTGCAACTTCATGCTCCACACTTGCAAGCCAAATCCTGTTGCTGCTGAATTAGATTCACCTGTGTAG 1890 44.34 MGNADFECPHRVSIPPKKPFLDSLSSNLKETFFPDDPFKQFKNQSLPTQILLWLKYFIPFLEWAPRYTFDFFKADLVAGITIASLAVPQGISYANLASIPPIIGLYSSFIPPLIYAMFGSSKDIAVGTVAVASLLMSAMLGKEVNPIEHPKQYVQLVFTATFFAGVFQASLGFLRLIFSSDTKLKRDILGFMGGAATVVCLQQLKGITGLVHFTHETDIVSVMRSLFSQIHKWRWESIVLGCCFLFFLLLTRYLVIILGSLLVYLTHAEKHGVQVIGNLKKGLNPPSVSDLVFGSPHLAIAIKTGIIIGIIGLAEGVAVGRSFAAFKNYHIDGNKEMIAFGMMNIVGSCTSCYLTAGPFSRTAVNFNAGCKTAVSNIVMAIALMITLLFLTPFFHYTPLVVLSSIIITAMLGLINYEEVIHLWKIDKFDFVVCLGAYIGVVFGSVETGLIVAITLSLLRVLLIIARPRTLVLGNIPNSTIYRSVDQYPTANNVPGILILQLEAPIYFANSNYLRERLSRWITDKEDRIKSSGETSLQYIILDISGVSSIDSSGISMLEEVKKSTERRGLKLVLANPRSEVIKKLNEAKFIEAIGQEWIYLTVGEAVTACNFMLHTCKPNPVAAELDSPV 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23958804 23964389 - Lsi05G016320.1 Lsi05g01632 664124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01632 629 Pfam Sulfate permease family 72 434 IPR011547 GO:0016021
Lsi05g01632 629 PANTHER SULFATE TRANSPORTER 4 623 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi05g01632 629 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271|GO:0008272
Lsi05g01632 629 Pfam STAS domain 487 605 IPR002645 -
Lsi05g01632 629 CDD STAS_SulP_like_sulfate_transporter 487 602 - -
Lsi05g01632 629 PANTHER BNAA04G05880D PROTEIN 4 623 IPR030311 GO:0008272|GO:0009507|GO:0015116
Lsi05g01632 629 Gene3D STAS domain 466 611 IPR036513 -
Lsi05g01632 629 SUPERFAMILY SpoIIaa-like 490 609 IPR036513 -
Lsi05g01632 629 TIGRFAM sulP: sulfate permease 59 605 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi05g01632 629 ProSiteProfiles STAS domain profile. 486 609 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01632 Lsi-Chr5:23958804 Lsi06g00888 Lsi-Chr6:18485412 0 dispersed
Lsi02g02261 Lsi-Chr2:29179045 Lsi05g01632 Lsi-Chr5:23958804 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01632 K17471 - csv:101203205 1105.89