Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01638 ATGGGGGCTGTGCCTTCTACGCCGCGTCGGTCCAACTCGCGGCCGCAGGATACGGCGGAGTACTTAATCGGAACTTTTGTAGGAGAGGAGTCTTTTCCTATTTCATCCGATTTCTGGCAGAAATTGCTTGAGCTTCCTCTTAGCCTGCAATGGCCGACTCACCGCGTTCATCAAGCTTGTGAGCTTTTAGCAACAAACAACTACAAGACGAGGCATCTTGCAAAGATTTTAATCCACATGGCATGGTGCTTACAAGAGTGCATTACGAACTCTGGAGCATCATCCTTGACTTATGAGAAGGCAATTAACTCTGTTTATATCTCATCCGTTTTCTTGAAGCACTTGATTGAAAATATGAAAAGTGACAAGATTGAAGAATTATATCTGTCCCTAAACGATAACGAATCAGCATCAAAAGAATTCATAGCAGATCAAAATGTTGTAGATTTTGTAATGCATGCTGTTCTTAGCTTTATTGGTTCAGTTAATATAAGCGACGAGAAATACTTCCTCCATGTGGAGCTGCTTAACTTCATGTTGATTGCCATGTCAACTCAACTTCTTTCTGGTCCATCTCCTAGACCAAAGGATTTTAATCCATTTATTGATGCAGCCATGGCTCAGGACAGTGCCTTGGTTATTGTGGTCATGCGCAAACTACTACTTAATTTTATAAGTCGGCCCAATGTACCTCTAAATAGTTCTTATCCCATATTTTCTGATGGAAATCAGTCCGGTGTCTTACAGAGAGTCAGTTCTGCAGCAGCAAATTTCGTGTTAATGCCATTCAACTACCTGGTCAATTCAACTTCCCAAGGCTCTGGAAGTCCATTGGCTGATTGCAGTCTAAATGTTCTTCTAATTCTCATTCATTATCGCAAGTGTATTGTTAGCAATGAATCTCTAGCAAGTGGTGATAACGGTAGCTCAGATTCTCTTTTGAAAGAGAATGCAACCTTTTACGATAATCCGTATTGCAAGGCCTTAGAAAATGCATCTGATGTTGAATTTGATCGTGTTGATTCAGATGGTAATGCACATAATGGTCCACTAGTGCGGTTACCATTTGCTTCACTGTTTGATACTCTTGGAATGTGCTTGGCTGATGAGGGTTCTGTGCTTCTGCTCTACTCATTATTGCAAGGGAACCCTGACTTCTTGGAATATGTTTTGGTGCGAACTGATTTGGATACATTGTTGATGCCAATTTTGGAAGCACTTTATAATGCTTCAACGAGGTCATCTAATCAAATCTACATGCTGCTGATCATACTTCTAATTCTTAGCCAGGATTCATCCTTCAATGCAAGCATTCACAAACTGATACTTCCTGCAGTTCCTTGGTATAAGGAGCGTCTTCTTCATCAAACATCTCTTGGTTCTCTGATGGTGATAATCTTGATCAGGACCGTACAGTTCAACCTATCTAAGTTGCGGGATGTATATCTCCATACAACTTGTCTTGCGACATTAGCAAACATGGCTCCTCATGTCCACCGCTTGAGTTCATATGCATCTCAGAGGCTGGTCAGCCTTTTTGATATGCTTTCAAGAAAGTATAACAGATCGGCAGAACTCAGAAACATTAAGGCCGATAATGCTAAAATCGACTCCACGGAAGTCGATTTCCCAGCGGATGATGCGTCAACTGAGATGCAAATTTATACCGACTTCTTGAGACTTGTCCTTGAAATTCTGAATGCGATTCTGTCTTATGCTCTACCACGGAATCCTGAGTTTATATATGCAATAATGCACCGGCAGGAAGTATTTCAGCCATTCAAGAATCACCCACGATTTAATGAACTTCTTGAGAACATTTACACTGTATTAGATTTCTTCAATAGCCGCATAGATGCTCAAAGAATGGATGATGATTGGTCAGTAGAGAAAGTGCTGCAAGTTATCATTAATAACTGCAGATCTTGGCGTGGGGAAGGTTTGAAGATGTTTACTCAACTACGTTTCACGTATGAGCAAGAGAGTCATCCCGAAGAGTTTTTCATTCCATATGTGTGGCAGCTTGTACTATCAACCTGTGGATTCAACTTCAATGCTGGTGTCATAAATTTGTTTGCGGCCAATCTACCTTCAGAAAAAGACGATGATGAAGGTCTAACGCAAGATGATAAGCAAGCAAATGGTGAGGTTCAGAAGTTGGCGATCTACATTGATCCTTAG 2181 41.08 MGAVPSTPRRSNSRPQDTAEYLIGTFVGEESFPISSDFWQKLLELPLSLQWPTHRVHQACELLATNNYKTRHLAKILIHMAWCLQECITNSGASSLTYEKAINSVYISSVFLKHLIENMKSDKIEELYLSLNDNESASKEFIADQNVVDFVMHAVLSFIGSVNISDEKYFLHVELLNFMLIAMSTQLLSGPSPRPKDFNPFIDAAMAQDSALVIVVMRKLLLNFISRPNVPLNSSYPIFSDGNQSGVLQRVSSAAANFVLMPFNYLVNSTSQGSGSPLADCSLNVLLILIHYRKCIVSNESLASGDNGSSDSLLKENATFYDNPYCKALENASDVEFDRVDSDGNAHNGPLVRLPFASLFDTLGMCLADEGSVLLLYSLLQGNPDFLEYVLVRTDLDTLLMPILEALYNASTRSSNQIYMLLIILLILSQDSSFNASIHKLILPAVPWYKERLLHQTSLGSLMVIILIRTVQFNLSKLRDVYLHTTCLATLANMAPHVHRLSSYASQRLVSLFDMLSRKYNRSAELRNIKADNAKIDSTEVDFPADDASTEMQIYTDFLRLVLEILNAILSYALPRNPEFIYAIMHRQEVFQPFKNHPRFNELLENIYTVLDFFNSRIDAQRMDDDWSVEKVLQVIINNCRSWRGEGLKMFTQLRFTYEQESHPEEFFIPYVWQLVLSTCGFNFNAGVINLFAANLPSEKDDDEGLTQDDKQANGEVQKLAIYIDP 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24031103 24040020 + Lsi05G016380.1 Lsi05g01638 664130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01638 726 Pfam Dyggve-Melchior-Clausen syndrome protein 1 675 - -
Lsi05g01638 726 PANTHER DYMECLIN 1 698 IPR019142 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01638 K23951 DYM; dymeclin - csv:101221590 1373.61
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g558 . . . . . . . . . . . Cma14g01746 Car06g01186 Car14g01575 Sed02g1343 Cpe08g00285 Cpe03g01466 Bhi01g00759 Tan10g0790 Cmetu06g0219 . Hepe05g1587 . Lcy11g1583 . . . . . . . . . Cone7ag0280 Cone4ag0272 Lsi05g01638 . . Cme06g00574 . Blo07g00233 Bda11g00598 . . Bpe13g00586 . Bma06g01571 . Cmo06g01383 Cmo14g01783 . . . . . . . . . . . . . Cla05g00508 Cam05g0559 Cec05g0571 Cco05g0569 Clacu05g0556 Cmu05g0527 Cre05g0596 . Csa03g01290 Chy06g00544 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006298 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38