Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01640 ATGGAGAGGAAGGTGAGAGAGAAGGGATTCGGATATCTGTTGGCGGGTCTTCTTCTGGCGAGCCTAATCGCCAGAATCGATTCAATTTCGGTCACTGTGAACGAGATTGAATGCGTCTATGAGTATGTATTGTACGAAGGCGATACTGTCTCTGGGAATTTTGTCGTCGTCGATCATGATATTTTCTGGGGCGCCGATCATCCCGGCATCGATTTCACTGTTACATCTCCCGCAGGTAATGTGGTACATTCTTTGAAGGAGACATCTGGGGACAAGTTTGAGTTTAAGGCTCCTCGCAGTGGAATGTATAAATTCTGTTTTCATAATCCCTACTCGACTCCGGAGACAGTTTCTTTCTACATCCATGTTGGTCACATTCCAAATGAACATGATCTTGCTAAAGATGAACACCTAGACCCTATAAATGTTAAAATTGCAGAGCTTAGAGAGGCATTGGAGTCGGTCACTGCTGAGCAGAAGTATTTGAAAGCACGTGATGCACGCCACCGTCACACAAATGAAAGTACAAGAAAGCGCGTAATTTTCTATACAGTGGGAGAGTATTTGTTGCTTGCTGTTGCAAGTGGGCTTCAGGTCATTTACATTCGTCGGCTCTTCAGCAAGTCGGTTGCATATAACCGGGTCTGA 648 45.06 MERKVREKGFGYLLAGLLLASLIARIDSISVTVNEIECVYEYVLYEGDTVSGNFVVVDHDIFWGADHPGIDFTVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFYIHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVIFYTVGEYLLLAVASGLQVIYIRRLFSKSVAYNRV 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24043719 24046918 + Lsi05G016400.1 Lsi05g01640 664132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01640 215 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 11 211 IPR015720 -
Lsi05g01640 215 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 44 132 IPR036598 -
Lsi05g01640 215 Pfam emp24/gp25L/p24 family/GOLD 31 206 IPR009038 -
Lsi05g01640 215 ProSiteProfiles GOLD domain profile. 36 123 IPR009038 -
Lsi05g01640 215 Coils Coil 145 165 - -
Lsi05g01640 215 SMART EMP24_GP25L_2 28 207 IPR009038 -
Lsi05g01640 215 PANTHER BNAC05G29650D PROTEIN 11 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01640 K20347 TMED2, EMP24; p24 family protein beta-1 - csv:101222530 407.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00185 Lsi-Chr5:2642324 Lsi05g01640 Lsi-Chr5:24043719 2.08E-15 dispersed
Lsi05g01640 Lsi-Chr5:24043719 Lsi11g01339 Lsi-Chr11:22016874 6.23E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g562 . Blo12g00342 Bda03g00865 Bda08g00256 . . Bma04g00761 . . . Cma06g01368 Cma14g01748 Car06g01184 Car14g01577 Sed02g1345 Cpe08g00287 Cpe03g01468 Bhi01g00757 Tan10g0787 Cmetu06g2088 . Hepe05g1589 . Lcy11g1585 . . . . . . . Cone14ag0886 . . Cone4ag0273 Lsi05g01640 . . Cme06g00572 . . Bda11g00599 . Bpe05g00881 Bpe13g00585 . . . Cmo06g01381 Cmo14g01785 . . . . . . . . . . . . . Cla05g00506 Cam05g0557 Cec05g0569 Cco05g0567 Clacu05g0553 Cmu05g0525 Cre05g0594 . Csa03g01288 Chy06g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004552 3 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 2 1 41