Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01641 ATGCTCGCCGTCTTCGACAAATCGGTGGCGAAAAGTCCCGACGCTCTGCAGAGCCCTGAGTCCGATTCCGTTTGGGCTCTCAAAGATGGAATTCTGGCCCAGCATTTTAGCTCCGTCTACCCTGGTTCTGTCATCATCAACCTCGGCTCCGCCGGTCTCTTGGCCTATTCCGTCGAAAAACAAAACCCTCTCCTCCCGAGATTTACCTGCTGTTGGCAAATTGATGATATTTGTTTTTATAACCTTAGATTATTTGCGGTTGTGGACGACATTTTCTGCTTGTTCCAAGGGCACATTGAGAATGTTGCTCAACTCAAACAACAATATGGTTTGAACAAAGCTGCAAACGAGGTTATCATCGTTATTGAAGCCTACCGAACATTAAGAGATCGGGGTCCATACCCAGCTGATCAAGTCGTGAGAGATATTCAAGGGAAATTTGTGTTTGTCCTATATGACAGTTCCTCAAAAACTTCATTTTTTGCTTCTGATGCTGATGGGAGCGTTCCTTTCCACTGGGGAACTGATTCTGAAGGACAGCTTGTTCTCTCCGATGATGTAGAAACTATGAAGAAGGGTTGTGGAAAATCTTTTGCTCCTTTCCCTAAAGGTTGTTTCTTCACCACTTCTGGTGGGTTGAGGAGTTATGAGCATCCACTTAATGAGCTGAAGCCAGTGCCAAGGGTGGATAGTTCAGGTAATGTTTGTGGAGCCAATTTCAAGGTGGATGCAGAGGCTAGAAAGGAAAGTTCTGGTATGCCAAGAGTTGGGAGTGCTGCAAATTGGTCTTCAAACTACTGA 801 45.44 MLAVFDKSVAKSPDALQSPESDSVWALKDGILAQHFSSVYPGSVIINLGSAGLLAYSVEKQNPLLPRFTCCWQIDDICFYNLRLFAVVDDIFCLFQGHIENVAQLKQQYGLNKAANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFVFVLYDSSSKTSFFASDADGSVPFHWGTDSEGQLVLSDDVETMKKGCGKSFAPFPKGCFFTTSGGLRSYEHPLNELKPVPRVDSSGNVCGANFKVDAEARKESSGMPRVGSAANWSSNY 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24055937 24057809 + Lsi05G016410.1 Lsi05g01641 664133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01641 266 PANTHER ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS 1 266 IPR044828 -
Lsi05g01641 266 SMART DUF3700_2 2 242 IPR024286 -
Lsi05g01641 266 CDD Wali7 2 242 - -
Lsi05g01641 266 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 81 218 IPR029055 -
Lsi05g01641 266 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 85 215 IPR029055 -
Lsi05g01641 266 Pfam Aluminium induced protein 2 242 IPR024286 -
Lsi05g01641 266 PANTHER ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS 1 266 - -
Lsi05g01641 266 MobiDBLite consensus disorder prediction 247 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01641 - - - csv:101222053 487.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01321 Lsi-Chr4:20997635 Lsi05g01641 Lsi-Chr5:24055937 1.46E-77 dispersed
Lsi05g01450 Lsi-Chr5:22358000 Lsi05g01641 Lsi-Chr5:24055937 9.43E-56 dispersed
Lsi05g01641 Lsi-Chr5:24055937 Lsi09g01353 Lsi-Chr9:21464738 6.53E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g563 . . . . . Bpe14g01212 . . . . Cma06g01367 Cma14g01749 Car06g01183 Car14g01578 Sed02g1346 Cpe08g00288 Cpe03g01469 Bhi01g00756 Tan10g0785 Cmetu06g2443 . Hepe05g1590 . Lcy11g1587 . . . . . . . . . . . Lsi05g01641 . . Cme06g00571 Blo02g00590 . . Bda13g00100 . . . Bma06g01572 . Cmo06g01380 Cmo14g01786 . . . . . . . . . . . . . Cla05g00505 Cam05g0556 Cec05g0568 Cco05g0566 Clacu05g0552 Cmu05g0524 Cre05g0593 . Csa03g01287 Chy06g00541 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007216 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 37