Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01643 ATGTTGCTCAGAGCCGAAGAACAAAGCCAGCAACTACAGCTTGTAGAGCGCGAAGATATTGAGGATGAAGACGACTTGTTCGAAGCGATTGATAAACTGACTTCTCATGGAATTAATGCTGGAGACGTGAAGAAGCTTCAGGACGCAGGGATATACACCTGCAACGGTTTGATGATGCACACGAAGAAGCACTTGACTGGGATAAAAGGTTTATCCGAGGCGAAGGTTGATAAGATCTGCGAAGCTGCCGAAAAGCTAGTGAATTTTGGTTATATCACTGGAAGCGATGCTCTGCTCAGGAGAAAGTCCGTGGTTCGCATTACAACTGGAAGCCAGGCTCTCGACGAACTCTTAGGAGGCAAGTCTTGCTTTACGACCTCTTCTCTGGCTTCGTTAAACGTGCCTAGATCCGGGAAAACGCAACTCGCGCATACTCTATGCGTCTCTACACAGCTTCCTACCAGCATGCGGGGAGGGAATGGAAAGGTTGCATACATTGACACTGAAGGCACTTTCCGACCTGATCGAATTGTGCCTATAGCTGAAAGATTTGGCATGGACCCGGGAGCTGTACTTGACAATATCATATATGCTCGTGCCTACACTTACGAACATCAACATAACCTTCTGCTCGGCCTTGCCGCAAAAATGTCTGAAGAACCATTTAAACTTCTGATCGTTGACTCTATCATCGCACTTTTTCGAGTGGATTTCACTGGAAGAGGAGAACTTGCAGAGCGCCAGCAAAAACTAGCGCAAATGCTGTCCCGATTAACTAAAATTGCAGAAGAGTTCAATGTCGCAGTTTACTTGACCAACCAAGTCGTTGCAGACCCAGGTGGAGGAGTGTTTGTATCAGATCCCAAAAAACCAGCAGGAGGCCACGTTCTTGCCCATGCCGCTACAGTAAGATTGATGTTCCGGAAAGGCAAAGGTGAACAACGGATCTGCAAGGTGTTCGATGCCCCTAATTTGCCGGAGTCTGAAGCTATATCCTTAACTCACATCACCTCTCACTTTGACACCTTCATTTACTATTATCTTAACGAGTTCTAA 1056 46.59 MLLRAEEQSQQLQLVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVNFGYITGSDALLRRKSVVRITTGSQALDELLGGKSCFTTSSLASLNVPRSGKTQLAHTLCVSTQLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQHNLLLGLAAKMSEEPFKLLIVDSIIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYLTNQVVADPGGGVFVSDPKKPAGGHVLAHAATVRLMFRKGKGEQRICKVFDAPNLPESEAISLTHITSHFDTFIYYYLNEF 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24058552 24061539 - Lsi05G016430.1 Lsi05g01643 664135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01643 351 PIRSF Rad51 16 337 IPR016467 -
Lsi05g01643 351 SUPERFAMILY Rad51 N-terminal domain-like 22 89 IPR010995 GO:0000166
Lsi05g01643 351 TIGRFAM recomb_DMC1: meiotic recombinase Dmc1 30 331 IPR011940 GO:0000150|GO:0003677|GO:0005634|GO:0007131
Lsi05g01643 351 CDD Rad51_DMC1_radA 107 330 IPR033925 GO:0003677
Lsi05g01643 351 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 14 333 - -
Lsi05g01643 351 Pfam Rad51 90 331 IPR013632 -
Lsi05g01643 351 ProSiteProfiles RecA family profile 1. 103 275 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lsi05g01643 351 Gene3D - 90 341 IPR027417 -
Lsi05g01643 351 PANTHER MEIOTIC RECOMBINATION PROTEIN DMC1-LIKE PROTEIN 14 333 - -
Lsi05g01643 351 Gene3D - 7 89 - -
Lsi05g01643 351 ProSiteProfiles RecA family profile 2. 281 330 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lsi05g01643 351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 330 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01643 K10872 DMC1; meiotic recombination protein DMC1 - csv:101221817 607.446
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01643 Lsi-Chr5:24058552 Lsi06g00372 Lsi-Chr6:4106837 7.12E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g564 . . . . . Bpe14g01213 . . . . Cma06g01366 Cma14g01751 Car06g01181 . Sed12g0976 Cpe08g00289 Cpe03g01470 Bhi01g00755 Tan10g0784 Cmetu06g1587 . Hepe05g1591 . . . . . . . . . . . . Cone4ag0274 Lsi05g01643 . . Cme06g00570 . Blo07g00234 Bda11g00600 . . . Bma02g00822 Bma06g01573 . Cmo06g01378 Cmo14g01788 . . . . . . . . . . . . . Cla05g00504 Cam05g0555 Cec05g0567 Cco05g0565 Clacu05g0551 Cmu05g0523 Cre05g0592 . Csa03g01286 Chy06g00540 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010242 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32