Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01645 ATGCCAGTACGGCAAATGAAAGAGAGCTCCGAGCAGCACCTTGTAATCAAAACCCACTTGCAGAACGTTGCTCAAAAAGCTCCGAAATCAACCCAAAATGGAAAAGGCCCGCCGAATCTGGAACACCAAAACATCAAATCTCGAAACCCATCTTCTCCTCCAAGTAAAAACAGGGGCCGGAGAAGGAGCAGAGGTGGCCGGAAATCCGATCAGGGAGAAGTGTTTATGAGGCCCAGTTCTCGGCCCTGCACGGTGGCACGTAAACCCGATGAACCGGAGTTTAATGCCGGAGCTCTGGTGGCAAGTACTAATCCAAATGGTGGTAGCATTAGTGGGATGCAAATGGGTTTTCGAAATTCAAGCAAGTCTTTGAGTTTTGCCCCAAGGCCTGGATTCGGGCAAGTCGGAACAAAGTGTATTGTAAAAGCAAACCATTTCTTTGCAGAGTTACCAGACAAAGATTTGAATCAATATGATGTTACAATTACTCCTGAAGTGGCATCAAGAACTGTGAACAGAGCCATCATGGCTGAATTGGTGAGATTATACAGAGAATCTGATCTGGGAAAAAAATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTTTGGAAAGAGTTTAATATCAAGCTTGTGGATGAAGAAGATGGAGTCAGTGGTCCCAAGAGGGAGAGGGAATATAAAGTAGTTATTAAGTTCGTTGCACGTGCAAATTTACACCATTTGGGTCAATTTCTGGCGGGTAAGCGTGCTGATGCTCCACAAGAAGCTCTTCAAATACTGGACATTGTATTGAGAGAGCTGTCATCTAAAAGGTACTGTCCTATAGGGAGATCCTTCTTTTCTCCAGATATTAGATCACCTCAGCGGCTTGGGGATGGGCTAGAATCATGGTGTGGTTTTTACCAGAGTATTAGACCTACTCAAATGGGACTGTCTCTGAACATTGCTGCATTCATTGAGCCTCTCCCTGTCCTTGAGTTTGTTGCTCAACTTCTAGGGAAAGATGTTTTGTCACGGCCATTGTCTGACTCCGATCGAGTAAAGATTAAAAAGGCTCTGAGAGGGGTGAAAGTTGAAGTAACACACCGTGGAAACGTAAGGCGGAAATATCGAGTTTCGGGTCTGACTTCACAGCCCACAAGAGAATTAGTATTTCCTGTTGATGACAACTCAACCATGAAGTCAGTTGTCGAATACTTCCAGGAGATGTATGGCTTCACCATTCAGCACGCACATCTCCCTTGCCTTCAAGTGGGAAACCAGAAGAAGGCAAATTATTTACCAATGGAGGCCTGCAAAATTGTAGGGGGGCAAAGATATACAAAGAGATTGAACGAGAAGCAAATAACTGCACTTCTAAAAGTCACATGTCAAAGACCTAGGGATCGAGAAAATGACATTTTGCAGACTGTCCAACATAATGCTTATGATAATGATCCTTATGCTAAGGAGTTTGGGATTAAAATCAGTGAGAAGCTGGCTTCCGTTGAAGCTAGAATTCTTCCTCCTCCATGGCTGAAATATCATGATACTGGAAAGGAGAAGGATTGCTTGCCTCAAGTGGGTCAATGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAACCGGTGGGCATGTATCAACTTCTCTAGGAGTGTGCAAGAGAGCGTTGCTCGTGGGTTTTGTGCTGAACTTGCTCAAATGTGTCAAGTGTCTGGAATGGAATTCAATCCAGAACCAGTTATTCCAATATACAACGCGAGGCCAGAACAGGTAGAGAAAGCTTTGAAGCATGTTTATCATGCTTCCATGAACAAGACCAAAGGGAAAGAGTTAGAGCTATTATTAGCTATTTTACCTGACAATAACGGGTCGCTTTACGGTGATCTTAAGCGAATTTGTGAAACTGATCTTGGTTTAATTTCACAATGCTGTCTTACAAAACACGTGTTCAAGATTAGTAAGCAGTACCTTGCTAATGTGTCACTGAAGATCAATGTCAAGATGGGCGGTAGAAACACTGTTCTTCTAGATGCTATCAGCTGCAGGATACCGCTTGTGAGTGACATACCAACAATAATATTTGGAGCGGACGTGACCCATCCAGAGAACGGCGAAGATTCCAGCCCTTCAATAGCTGCTGTACTGTCTCCTAATCCAATGCAGGTAGTAGCCTCTCAGGATTGGCCTGAAGTGACAAAATATGCTGGACTAGTATGTGCTCAGGCTCATAGACAAGAACTTATACAAGACTTGTACAAAACATGGCAGGATCCTGTCCGTGGCACTGTCAGTGGTGGCATGATCAGGGATCTTCTGGTTTCGTTTAGGAAAGCAACAGGGCAGAAGCCTCTCAGGATAATATTTTACAGGGATGGTGTAAGCGAAGGGCAATTCTATCAAGTACTACTTTATGAGCTGGATGCAATCAGGAAGGCATGTGCTTCTTTAGAACCGAATTACCAACCACCCGTAACGTTCATTGTCGTACAAAAGCGACACCACACCCGATTGTTCGCCAACAACTATAGAGATAGAAGTAGCACAGACAAGAGTGGAAACATTTTACCTGGCACTGTAGTCGACTCCAAAATATGCCACCCAACAGAATTTGATTTCTATCTCTGTAGCCATGCTGGAATTCAGGGGACGAGTCGACCAGCTCACTACCATGTTCTTTGGGATGAAAACAATTTTACTGCAGATGGAATTCAGTCGTTAACAAACAATCTTTGCTACACTTATGCAAGGTGTACACGTTCGGTTTCTGTCGTCCCTCCAGCATACTATGCACATTTAGCTGCATTCCGAGCTCGATTCTACATGGAACCAGAGATGCAGGAGAATGGCTCAGCTGGTCGTTCAGCCAAGAGTACACGCACTACCGGAGACTCTGGGGTTCGTCCTTTGCCAGCTCTAAAGGAAAATGTGAAGAGAGTTATGTTTTACTGTTAG 2967 44.02 MPVRQMKESSEQHLVIKTHLQNVAQKAPKSTQNGKGPPNLEHQNIKSRNPSSPPSKNRGRRRSRGGRKSDQGEVFMRPSSRPCTVARKPDEPEFNAGALVASTNPNGGSISGMQMGFRNSSKSLSFAPRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYRESDLGKKLPAYDGRKSLYTAGELPFVWKEFNIKLVDEEDGVSGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRYCPIGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIAAFIEPLPVLEFVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNAYDNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCAELAQMCQVSGMEFNPEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVLSPNPMQVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNYRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSAGRSAKSTRTTGDSGVRPLPALKENVKRVMFYC 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24088056 24094861 - Lsi05G016450.1 Lsi05g01645 664137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01645 988 CDD PAZ_argonaute_like 329 443 - -
Lsi05g01645 988 MobiDBLite consensus disorder prediction 22 54 - -
Lsi05g01645 988 MobiDBLite consensus disorder prediction 951 973 - -
Lsi05g01645 988 Pfam PAZ domain 356 460 IPR003100 GO:0005515
Lsi05g01645 988 Pfam Argonaute linker 1 domain 282 323 IPR014811 -
Lsi05g01645 988 MobiDBLite consensus disorder prediction 955 969 - -
Lsi05g01645 988 Pfam Piwi domain 619 946 IPR003165 GO:0003676
Lsi05g01645 988 ProSiteProfiles PAZ domain profile. 330 444 IPR003100 GO:0005515
Lsi05g01645 988 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 57 987 - -
Lsi05g01645 988 ProSiteProfiles Piwi domain profile. 618 947 IPR003165 GO:0003676
Lsi05g01645 988 SMART PAZ_2_a_3 334 466 IPR003100 GO:0005515
Lsi05g01645 988 SUPERFAMILY PAZ domain 324 484 IPR036085 GO:0005515
Lsi05g01645 988 SMART Piwi_a_2 618 947 IPR003165 GO:0003676
Lsi05g01645 988 Gene3D - 508 681 - -
Lsi05g01645 988 CDD Piwi_ago-like 488 946 IPR045246 -
Lsi05g01645 988 SUPERFAMILY Ribonuclease H-like 606 947 IPR012337 -
Lsi05g01645 988 Gene3D - 687 988 IPR036397 GO:0003676
Lsi05g01645 988 MobiDBLite consensus disorder prediction 22 88 - -
Lsi05g01645 988 Pfam Argonaute linker 2 domain 470 516 IPR032472 -
Lsi05g01645 988 PANTHER PROTEIN ARGONAUTE 10 57 987 - -
Lsi05g01645 988 Pfam Mid domain of argonaute 527 604 IPR032473 -
Lsi05g01645 988 Gene3D paz domain 324 448 - -
Lsi05g01645 988 SMART DUF1785_2 281 329 IPR014811 -
Lsi05g01645 988 Pfam N-terminal domain of argonaute 138 272 IPR032474 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00042 Lsi-Chr2:412939 Lsi05g01645 Lsi-Chr5:24088056 0 dispersed
Lsi03g00070 Lsi-Chr3:985293 Lsi05g01645 Lsi-Chr5:24088056 0 dispersed
Lsi04g00389 Lsi-Chr4:3829502 Lsi05g01645 Lsi-Chr5:24088056 0 dispersed
Lsi05g01645 Lsi-Chr5:24088056 Lsi06g00915 Lsi-Chr6:18868531 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01645 K11593 - csv:101221352 1916.35