Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01648 ATGGCGTCCATGGCCACTCGTTTCACCAAAACCCCATCCCCATTTCATTCTATTCAAAGAACTTCTTACTCCCATTTGGGCGCTCCGATTAAAGTCTCCATTGCTAGCTCTAAGTCGAAGAAGACCCATCTCCGCCTCCGGGTTTCCGCCGGTTTGATCGAACCCGACGGCGGAAGGCTGGTGGAGCTTCTTGTTGAGGAGCCTCTGAGGGGTCTGAAGAAGAAGGAAGCCTTATCCTTGCCGAGGATCGAGCTTTCTAGCATCGATATTCAATGGGTTCATGTGCTCAGCGAAGGATGGGCCAGTCCTCTTACCGGATTCATGAGAGAATCCGAGTTCCTCCAAACGCTTCATTTCAATTCCCTCAGGCTTCCGGATGGGTCTGTGGCGAACATGTCAGTGCCCATTGTTCTGGCTATTGACGATGCCCAAAAGCACCGCATCGGGGATTCCACCAGTGTGGCTCTCTTTGACGACAAGAACAACCCCATCGCTATTCTCAAGGATATTGAGATCTACAAGCACCCTAAAGAAGAAAGGATAGCTAGAACCTGGGGCACCACTGCCCCGGGGCTCCCTTATGTTGATCAAGCTATAACCAATGCTGGTAATTGGCTGATAGGAGGTGACTTAGAGGTTATAGAGCCAATCAAGTACCATGATGGCCTTGACCGTTTTAGACAGTCGCCTGCAGAACTACGGGAGGAATTTACCCGGCGAAATGCAGATGCCGTGTTTGCATTTCAACTTCGAAACCCAGTGCATAACGGGCATGCATTACTAATGACTGATACCCGCCGTCGACTGCTCGAGATGGGATACAAGAATCCCATTTTGTTGCTTCATCCTTTGGGTGGCTACACCAAGGCAGATGATGTTCCACTTAGTTGGCGAATGAAGCAACATGAGAAGGTGCTCGAGGACGGTGTTCTTGATCCAGAGACAACAGTCGTCTCCATATTTCCATCTCCAATGCACTATGCAGGGCCAACTGAGGTGCAGTGGCATGCAAAGGCAAGAATTAATGCAGGAGCCAACTTTTACATTGTTGGACGCGACCCAGCTGGAATGGGTCATCCTACTGAGAAAAGGGATTTATATGATGCTGACCATGGGAAAAAAGTGTTGAGCATGGCACGTGGGCTAGAGCGGCTAAACATCCTTCCTTTCAGAGTTGCTGCTTACGATAAAACTCAGGGGAAGATGGCCTTCTTTGACCCCTCTAGAGCTCAGGATTTCCTTTTCATATCCGGCACCAAGATGAGAACTCTAGCAAAGAATAAAGAGAATCCACCAGAAGGGTTTATGTGCCCAGGTGGATGGAAGGTGTTGGTTGAATATTACGATAGTTTGGTACCTGCAAGCAGTGGCAAACTTCCTGAACCTGAAGCTGTTCTGGCAAGCATTGCTCAATTTGCCTCTCTTTGTAAGTTAGATGCCCTCATCGCATCTTTGGATTTGCTGGCTACAACAGATCAAGCTGTCAAATATCACCACCATCATAACAATGGATTTGTTGAGTTGAATATGGGAAATGAGATGGGAAACAATAACACATCTGAGTTTAGAGAGGAAGAAAAGGCAAAAGCTGAAGGTCCAGAAAAATCTTTACTAGAAGGCGGGGAAAATGGAGTCAAAGCAGATGAAGTTGCAGGCTTCCACCAAAAAGAGGCAAGGCGGAATTCTGGTGATGCAGATAGAGTAAATGGAGATCATCATATCACAGAGAAAGAGGAAGAGAAAAACAAAGCATGTAATATAGCAGAATTTCAAGTGGTTTCTGAAAAATTACTTGACCGAACTAAAGAGGACAATGAAGTCGACGTCAAGCCTAAAGAAGATAAAGAAATGTTCAACTCAGAAGAGAATAGGTCCGATGGAAATGAGCACGAGCATGAAAGGCAGGCTTCAAATCAGAAAGAGGAAGAAGGGGAGAGAGGTTCCAACTTGAACACAACAGTACTTTCATTAGATCAGCCGGAAGTTGAAAAGATTGCTGATTTCAAGAGTAATCAGCACGAATTGCTAGCCGAATCATTGATAGAAGATAGCAGCAAATCCCAAGAAGAATGCAAGGATGCTTTGGAATTGAGCTTGAACAACACTTACCATTCAGCAGATTGTGTCATGGCAGATTCAGAAGAAAACACCAATATGGATCAAGTTATTGATACTGACCGAGGTACTAATAGGGAAAATGATGGAGAGAAGGGAAAGTCCAACATCGACATGATAACAAATGCATCAGAAGATGAAAAGTCTGAAAAGACATCAGATTTTGATATTGATCAAGTCATTGATAATGATCGAGATACAGATAAGGAAAGTGATGGAGAGAAAGGAAAAGGTTCAAACTTCAACATGATAACACATGCATCAAGAGATCCAAAATCTGAAATGAATTCAGAATTCGATACTGATCAAGTAATTGATACTGATCTAGACGCATATAAGGAAAATAATGAAGAGAGGAGAAACGGTTCCAACTTCGACACTTCAAAAGATCCAAATTTTGAAAAGATTTCAAATTTGGAAACTGATCAAGTTGTTCATACTGATCGAGATACAGATAAGGAAAACGATGAAGAGAGGGGCAACGGCTCCAACTTCGACACATTAATACATACATCAAAAGATCCAAATTCTGAAACTAGTTCAGATCTTAAGTCTATTCAGCATGAGTCACTTGAAACCAACGCTGAATCATTGACTCGATCAAGTGATGATGGAGACACAGATATGGAGAAGAAAAAAGGTGATCTAGTAGAGCCAAGGCCATGCCATGGATATAAAATGCCAACTGCCAAAATTGTTGATACTAAAGATGAAGGAACTGCAACTGATTTGATATGTCATAATTCTTCATGTTCACTAGCAGAAGAGAGTCTGGTGATAGAATCACCCACTTCATCTATGCAAGTTCCTCAGGTTGAAGACAGATGCACGGTTTTGAAAAAAGAATCCCAATTAAGAGAAGAACATTTAGGAACTGAAACGGTCGTTGAAGACAATATTCCAACTCAATCTAAGATTACAAATGGGGTCCAAGAGAAATTTAACACGATTGGGTCACACTCGGAGAACAATGCAGAAGAAACTGAAGTTTCTCCTGAATTTGTTGCCAAGAACGAGAACCAGAACGAGGCTCCTGAAGAGGATTGCGAGGATTCAGATGGAGAATATCTGGAAATTTCTGAACAAGGTATGAATATTTTGAATTCATCTATTGGAGATTGCAAGCATAAGAATGAGGAGATGGGAGAGATGACGGAAATTTCAACAAACGATGAACATGCAGAACGACGAGAACCAGATGAAAGCCTATTTGAACCTGTTTTAGGATTTCAACCTCAAATCCAGCAAAAGGAAAATTCAATCAAATCTCAAACTGCAGAAAGTACAGATGAATTGATGTCAGCACCGGGGCAAGAAATCGATACAGCAACTGAAAAATCCAAGAACAATCCCTCGGATTCCCCAAGTTATATTCAAACAGCTTCAGCGACACTCACAGAAACTAAACCATCGATAAACCCGATCGACGAACAGAGTTTAACAACACTTCCATTCTCCACATTCGGAGGAGAAGATCAAGATTCTCCAGGAAGAACAAGCAACGAATCAATTTCCGAAAATTCAATTGGTCATATCGAGATGCGTAAATCGCCTAGCTTCAATATAGATATCCAAAGCGAAGGAAGGGCAGGAGAAACAGAGAAAACCCCATTGCTATACCAAATTAAGACAATCGAAGACTTACCAAATCTGCAGGAGATTAGCTTTCCAAATCCAATGGAGAAACGAGTGGTGAAGTTGGGAAGAAGCGATTCAGAGAAATCGAGATCGTCTTTCCCAGGGTTCGCGAAAGAAAAAGAAGAATCCGGGATGGAATTCAAAGCAATCGATCAAAATAACTTCGCCGCCGATAAGAAGGTAGCAAAAGACTTACCACCGCCATCGCCGATTCGTAAAGGGAAGCGCAGAACGAAATCCCTAATTTTTGGGACTTGCATCTGCTGTGCAACAGCGATCAATTGA 4038 42.94 MASMATRFTKTPSPFHSIQRTSYSHLGAPIKVSIASSKSKKTHLRLRVSAGLIEPDGGRLVELLVEEPLRGLKKKEALSLPRIELSSIDIQWVHVLSEGWASPLTGFMRESEFLQTLHFNSLRLPDGSVANMSVPIVLAIDDAQKHRIGDSTSVALFDDKNNPIAILKDIEIYKHPKEERIARTWGTTAPGLPYVDQAITNAGNWLIGGDLEVIEPIKYHDGLDRFRQSPAELREEFTRRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYKNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDADHGKKVLSMARGLERLNILPFRVAAYDKTQGKMAFFDPSRAQDFLFISGTKMRTLAKNKENPPEGFMCPGGWKVLVEYYDSLVPASSGKLPEPEAVLASIAQFASLCKLDALIASLDLLATTDQAVKYHHHHNNGFVELNMGNEMGNNNTSEFREEEKAKAEGPEKSLLEGGENGVKADEVAGFHQKEARRNSGDADRVNGDHHITEKEEEKNKACNIAEFQVVSEKLLDRTKEDNEVDVKPKEDKEMFNSEENRSDGNEHEHERQASNQKEEEGERGSNLNTTVLSLDQPEVEKIADFKSNQHELLAESLIEDSSKSQEECKDALELSLNNTYHSADCVMADSEENTNMDQVIDTDRGTNRENDGEKGKSNIDMITNASEDEKSEKTSDFDIDQVIDNDRDTDKESDGEKGKGSNFNMITHASRDPKSEMNSEFDTDQVIDTDLDAYKENNEERRNGSNFDTSKDPNFEKISNLETDQVVHTDRDTDKENDEERGNGSNFDTLIHTSKDPNSETSSDLKSIQHESLETNAESLTRSSDDGDTDMEKKKGDLVEPRPCHGYKMPTAKIVDTKDEGTATDLICHNSSCSLAEESLVIESPTSSMQVPQVEDRCTVLKKESQLREEHLGTETVVEDNIPTQSKITNGVQEKFNTIGSHSENNAEETEVSPEFVAKNENQNEAPEEDCEDSDGEYLEISEQGMNILNSSIGDCKHKNEEMGEMTEISTNDEHAERREPDESLFEPVLGFQPQIQQKENSIKSQTAESTDELMSAPGQEIDTATEKSKNNPSDSPSYIQTASATLTETKPSINPIDEQSLTTLPFSTFGGEDQDSPGRTSNESISENSIGHIEMRKSPSFNIDIQSEGRAGETEKTPLLYQIKTIEDLPNLQEISFPNPMEKRVVKLGRSDSEKSRSSFPGFAKEKEESGMEFKAIDQNNFAADKKVAKDLPPPSPIRKGKRRTKSLIFGTCICCATAIN 1345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24123857 24132411 + Lsi05G016480.1 Lsi05g01648 664140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 904 925 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 517 540 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 1117 1137 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 838 868 - -
Lsi05g01648 1345 PANTHER ATP SULFURYLASE 1, CHLOROPLASTIC 1 462 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 1082 1108 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 712 934 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 553 581 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 811 830 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 994 1061 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 1001 1030 - -
Lsi05g01648 1345 Pfam PUA-like domain 53 215 IPR025980 -
Lsi05g01648 1345 SUPERFAMILY PUA domain-like 53 221 IPR015947 -
Lsi05g01648 1345 Gene3D HUPs 220 454 IPR014729 -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 869 903 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 519 536 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 601 657 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 1145 1225 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 725 739 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 746 781 - -
Lsi05g01648 1345 TIGRFAM sopT: sulfate adenylyltransferase 55 446 IPR002650 GO:0000103|GO:0004781
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 601 647 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 1272 1295 - -
Lsi05g01648 1345 Gene3D Sulfate adenylyltransferase 51 219 - -
Lsi05g01648 1345 CDD ATPS 80 447 IPR002650 GO:0000103|GO:0004781
Lsi05g01648 1345 SUPERFAMILY Nucleotidylyl transferase 225 448 - -
Lsi05g01648 1345 Pfam ATP-sulfurylase 225 447 IPR024951 GO:0004781
Lsi05g01648 1345 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 1 462 - -
Lsi05g01648 1345 MobiDBLite consensus disorder prediction 1082 1225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01648 K13811 PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase [EC:2.7.7.4 2.7.1.25] - csv:105434833 1220.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01731 Lsi-Chr4:24669071 Lsi05g01648 Lsi-Chr5:24123857 6.85E-173 dispersed
Lsi05g01648 Lsi-Chr5:24123857 Lsi09g01290 Lsi-Chr9:20736953 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g578 . . . . . . . . . . Cma06g01356 . Car06g01177 . Sed02g1355 . . Bhi01g00747 Tan10g0777 Cmetu06g1274 . Hepe05g1595 . Lcy11g1592 . . . . . . . . . . . Lsi05g01648 . . Cme06g00565 . . . . . . . . . Cmo06g01371 . . . . . . . . . . . . . . . . . . . . . . Csa03g01281 Chy06g00533 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008657 0 1 0 0 0 1 2 1 1 1 1 1 4 1 1 3 1 0 1 1 1 1 1 1 1 1 1 3 1 1 33