Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01655 ATGATGACTGTTGTGTTGGCCTTCCAACGGCATGAAAGTGTGAGGATGCTGCTTCGAAAAAACGACCCTCTGACTCTGACTTCTGATTTTGCCAATACGCTTCACTTCCAAGGCACTGCCACCGCCGCCGCTATGGAGACGGGGCTCCGGCCCACGCCCGGCGCAGCTCCATCTTTCACCGGCGCCACCCTTCTTGGAAAGTACCAATTAGGCCGCCTTCTTGGTCGCGGAAGCTTCGCCAAAGTCTACCAAGCAGTTTCCTTAGCCGATAACTCCACCGTTGCCGTCAAAATCATCGACAAATCCAAAACCGTCGGCGCCACCCTGGAACGTTGCATAGTCCGGGAGGTTGCCGCCATGCGCCGCCTCGATCACCACCCAAACATCCTCAAAATCCACGAAGTCATGGCGACCAAGTCCAAAATCTACCTGGTGGTCGAATTCGCCGCCGGCGGCGAACTCTTAGCTAAAATCTCCCGCCGTGGGCGATTCACCGAACCCGTCGCCCGCCGGTACTTCCAACAACTTGTCTCAGCCCTCAAGTTTTGCCACGAAAACGGCGTCGTTCATCGCGATGTGAAGCCGCAGAATCTTTTGCTGGACGAACAGGGCAATCTGAAAATCTCCGATTTCGGTCTCTCTGCTTTACCCGAACAGCTCAGAGACGGGTTACTCCACACGGCTTGTGGAACTCCAGCGTACTCAGCGCCGGAGGTCATGATCCGGCGCGGTGGCGGAGGATACGACGGCGGAAAAGCCGACGCCTGGTCTTGTGGAGTGATTTTATTCGTATTGCTCTCTGGGTTTCTCCCTTTCGACGACAGTAACCTAGCGGCGATGTACAAGAAAATCCACCGGCGAGAATTTCAAATCCCTAATGGGATATCGAAACCGGCCCGATTCCTAATATGTCATCTCCTCGATCCGAATCCCAAAACGAGGATGAGCATTGAGGCGCTAATGCAAAGCCCTTGGTTCAAGAAATCACTGCAATTGAAACAGAGTAATGAGAGTCTATTGCAATCGATGAGGGATTATCGATTGGGGAAAGAGAGGGGAATTGGGGAAATGAATGCGTTCGATATAATTTCGATGTCGTCGGGGTTGGATTTATCGGGGCTGTTTGAAACGGCGGAGAAGAGGGCGGAGAGGAGGTTTACGTCGAGGGCAACGGTGATGGAGGTGGAGGAGAGAGTGAGGGAGATGGGCGGAGAGTTGGGATATGAGGTGGAGGCGGGGGCGAAGGGAGGGGCGATCGGAATGGGGAAGGGGAGGGTGGTGGTGGTGGTGGAAATGGTGGAGGTAGCGGTGGCGCCGGTGACATTGACGATGGTGGAGGTGAGGGTGGTGAAAGGATGGGAGGAGTTTGAAGAGGTCCATTGGAGGTGTTTTGAAGGTAAACTTGAAGGATTTTCAGTTCCATGGCAGAGGAAATGTAATCTGTGA 1446 54.01 MMTVVLAFQRHESVRMLLRKNDPLTLTSDFANTLHFQGTATAAAMETGLRPTPGAAPSFTGATLLGKYQLGRLLGRGSFAKVYQAVSLADNSTVAVKIIDKSKTVGATLERCIVREVAAMRRLDHHPNILKIHEVMATKSKIYLVVEFAAGGELLAKISRRGRFTEPVARRYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQGNLKISDFGLSALPEQLRDGLLHTACGTPAYSAPEVMIRRGGGGYDGGKADAWSCGVILFVLLSGFLPFDDSNLAAMYKKIHRREFQIPNGISKPARFLICHLLDPNPKTRMSIEALMQSPWFKKSLQLKQSNESLLQSMRDYRLGKERGIGEMNAFDIISMSSGLDLSGLFETAEKRAERRFTSRATVMEVEERVREMGGELGYEVEAGAKGGAIGMGKGRVVVVVEMVEVAVAPVTLTMVEVRVVKGWEEFEEVHWRCFEGKLEGFSVPWQRKCNL 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24219412 24223810 + Lsi05G016550.1 Lsi05g01655 664147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01655 481 PANTHER SERINE/THREONINE KINASE 59 476 - -
Lsi05g01655 481 ProSiteProfiles Protein kinase domain profile. 68 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01655 481 Pfam NAF domain 357 411 IPR004041 GO:0007165
Lsi05g01655 481 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Lsi05g01655 481 CDD CIPK_C 358 462 - -
Lsi05g01655 481 Gene3D Phosphorylase Kinase; domain 1 57 150 - -
Lsi05g01655 481 Gene3D Kinase associated domain 1, KA1 353 471 - -
Lsi05g01655 481 SUPERFAMILY Protein kinase-like (PK-like) 65 338 IPR011009 -
Lsi05g01655 481 ProSiteProfiles NAF domain profile. 352 376 IPR018451 GO:0007165
Lsi05g01655 481 SMART serkin_6 68 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01655 481 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 59 476 - -
Lsi05g01655 481 Gene3D Transferase(Phosphotransferase) domain 1 151 349 - -
Lsi05g01655 481 Pfam Protein kinase domain 68 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01655 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01655 Lsi09g01281 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01655 Lsi-Chr5:24219412 Lsi10g01479 Lsi-Chr10:18898095 4.83E-125 dispersed
Lsi01g01648 Lsi-Chr1:14989344 Lsi05g01655 Lsi-Chr5:24219412 7.30E-10 transposed
Lsi09g01018 Lsi-Chr9:14069139 Lsi05g01655 Lsi-Chr5:24219412 1.65E-11 transposed
Lsi05g01655 Lsi-Chr5:24219412 Lsi09g01281 Lsi-Chr9:20651591 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83672 PF00069 Pkinase 4.40E-69 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01655 K12761 - csv:101217555 724.546