Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g01655 | ATGATGACTGTTGTGTTGGCCTTCCAACGGCATGAAAGTGTGAGGATGCTGCTTCGAAAAAACGACCCTCTGACTCTGACTTCTGATTTTGCCAATACGCTTCACTTCCAAGGCACTGCCACCGCCGCCGCTATGGAGACGGGGCTCCGGCCCACGCCCGGCGCAGCTCCATCTTTCACCGGCGCCACCCTTCTTGGAAAGTACCAATTAGGCCGCCTTCTTGGTCGCGGAAGCTTCGCCAAAGTCTACCAAGCAGTTTCCTTAGCCGATAACTCCACCGTTGCCGTCAAAATCATCGACAAATCCAAAACCGTCGGCGCCACCCTGGAACGTTGCATAGTCCGGGAGGTTGCCGCCATGCGCCGCCTCGATCACCACCCAAACATCCTCAAAATCCACGAAGTCATGGCGACCAAGTCCAAAATCTACCTGGTGGTCGAATTCGCCGCCGGCGGCGAACTCTTAGCTAAAATCTCCCGCCGTGGGCGATTCACCGAACCCGTCGCCCGCCGGTACTTCCAACAACTTGTCTCAGCCCTCAAGTTTTGCCACGAAAACGGCGTCGTTCATCGCGATGTGAAGCCGCAGAATCTTTTGCTGGACGAACAGGGCAATCTGAAAATCTCCGATTTCGGTCTCTCTGCTTTACCCGAACAGCTCAGAGACGGGTTACTCCACACGGCTTGTGGAACTCCAGCGTACTCAGCGCCGGAGGTCATGATCCGGCGCGGTGGCGGAGGATACGACGGCGGAAAAGCCGACGCCTGGTCTTGTGGAGTGATTTTATTCGTATTGCTCTCTGGGTTTCTCCCTTTCGACGACAGTAACCTAGCGGCGATGTACAAGAAAATCCACCGGCGAGAATTTCAAATCCCTAATGGGATATCGAAACCGGCCCGATTCCTAATATGTCATCTCCTCGATCCGAATCCCAAAACGAGGATGAGCATTGAGGCGCTAATGCAAAGCCCTTGGTTCAAGAAATCACTGCAATTGAAACAGAGTAATGAGAGTCTATTGCAATCGATGAGGGATTATCGATTGGGGAAAGAGAGGGGAATTGGGGAAATGAATGCGTTCGATATAATTTCGATGTCGTCGGGGTTGGATTTATCGGGGCTGTTTGAAACGGCGGAGAAGAGGGCGGAGAGGAGGTTTACGTCGAGGGCAACGGTGATGGAGGTGGAGGAGAGAGTGAGGGAGATGGGCGGAGAGTTGGGATATGAGGTGGAGGCGGGGGCGAAGGGAGGGGCGATCGGAATGGGGAAGGGGAGGGTGGTGGTGGTGGTGGAAATGGTGGAGGTAGCGGTGGCGCCGGTGACATTGACGATGGTGGAGGTGAGGGTGGTGAAAGGATGGGAGGAGTTTGAAGAGGTCCATTGGAGGTGTTTTGAAGGTAAACTTGAAGGATTTTCAGTTCCATGGCAGAGGAAATGTAATCTGTGA | 1446 | 54.01 | MMTVVLAFQRHESVRMLLRKNDPLTLTSDFANTLHFQGTATAAAMETGLRPTPGAAPSFTGATLLGKYQLGRLLGRGSFAKVYQAVSLADNSTVAVKIIDKSKTVGATLERCIVREVAAMRRLDHHPNILKIHEVMATKSKIYLVVEFAAGGELLAKISRRGRFTEPVARRYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQGNLKISDFGLSALPEQLRDGLLHTACGTPAYSAPEVMIRRGGGGYDGGKADAWSCGVILFVLLSGFLPFDDSNLAAMYKKIHRREFQIPNGISKPARFLICHLLDPNPKTRMSIEALMQSPWFKKSLQLKQSNESLLQSMRDYRLGKERGIGEMNAFDIISMSSGLDLSGLFETAEKRAERRFTSRATVMEVEERVREMGGELGYEVEAGAKGGAIGMGKGRVVVVVEMVEVAVAPVTLTMVEVRVVKGWEEFEEVHWRCFEGKLEGFSVPWQRKCNL | 481 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 24219412 | 24223810 | + | Lsi05G016550.1 | Lsi05g01655 | 664147 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g01655 | 481 | PANTHER | SERINE/THREONINE KINASE | 59 | 476 | - | - | |
Lsi05g01655 | 481 | ProSiteProfiles | Protein kinase domain profile. | 68 | 326 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g01655 | 481 | Pfam | NAF domain | 357 | 411 | IPR004041 | GO:0007165 | |
Lsi05g01655 | 481 | ProSitePatterns | Protein kinases ATP-binding region signature. | 74 | 97 | IPR017441 | GO:0005524 | |
Lsi05g01655 | 481 | CDD | CIPK_C | 358 | 462 | - | - | |
Lsi05g01655 | 481 | Gene3D | Phosphorylase Kinase; domain 1 | 57 | 150 | - | - | |
Lsi05g01655 | 481 | Gene3D | Kinase associated domain 1, KA1 | 353 | 471 | - | - | |
Lsi05g01655 | 481 | SUPERFAMILY | Protein kinase-like (PK-like) | 65 | 338 | IPR011009 | - | |
Lsi05g01655 | 481 | ProSiteProfiles | NAF domain profile. | 352 | 376 | IPR018451 | GO:0007165 | |
Lsi05g01655 | 481 | SMART | serkin_6 | 68 | 326 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g01655 | 481 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 59 | 476 | - | - | |
Lsi05g01655 | 481 | Gene3D | Transferase(Phosphotransferase) domain 1 | 151 | 349 | - | - | |
Lsi05g01655 | 481 | Pfam | Protein kinase domain | 68 | 326 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g01655 | 481 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 188 | 200 | IPR008271 | GO:0004672|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi05g01655 | Lsi09g01281 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g01655 | Lsi-Chr5:24219412 | Lsi10g01479 | Lsi-Chr10:18898095 | 4.83E-125 | dispersed | |
Lsi01g01648 | Lsi-Chr1:14989344 | Lsi05g01655 | Lsi-Chr5:24219412 | 7.30E-10 | transposed | |
Lsi09g01018 | Lsi-Chr9:14069139 | Lsi05g01655 | Lsi-Chr5:24219412 | 1.65E-11 | transposed | |
Lsi05g01655 | Lsi-Chr5:24219412 | Lsi09g01281 | Lsi-Chr9:20651591 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83672 | PF00069 | Pkinase | 4.40E-69 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g01655 | K12761 | - | csv:101217555 | 724.546 |