Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01658 ATGAGCATGGGGAAAAAACGAAAAAAAAAAAAAAAAAAAATGAAATCCCCAATCCGCCATTGCTCCTCTGCTCTCTTCTTCTTCTTCTTCTTCATCTTCTTCCATCTTTCCGCCGCCCAAGGCCCCGACGCCGACGGCTACACCTGCTCCGCCAACCAGACTGCCAACCCATGCCAGGCCTACGTCTTCTACCGAGCCGCCGCCCCCAATTTCCTCGACTTAGCTGCCATTGCTGACCTCTTCTGGGTCAGCCGCCTCGAAATTTCCCGTCCCAGCAAAATCTCCGACTCCAACGCCACTTTCCCCCTCCTCTCCGGCCAGCCCCTCTTCATTCCCATCACCTGCTCCTGCAACTCCGTCAACGCCTCCGTCAGCATCTCTTACGCCAATCTCTCCTACAAAATCAACGCCGGCGACAATTTCTGGCTCGTCTCCACCTCCAAATTTCAGAATCTTACCACTTACCAATCTGTCGAAATCGCCAATCCCACTTTAAACCCAACTAATCTTTCAATTGGCGTCGATGTCGTTTTTCCCATCTTCTGCAAGTGCCCTAATCCCACCCAACTCCAAAATCGCGTCAATTTCATGGTCTCTTACGTGATTCAGCCCGCCGACACTCTGTCCTCCATAGCTTCAATGTTCGGTGTACAAACATCGGAAATCACAGCCGCGAATTGGCCAAACCCGCAGCCATTCGAGACGATTTTCATCCCGGTGAGTCGTCTTCCCAATTTGACGCAGCCCATTGTGTTGCTCCCGTCTCCGGAGCAGGCGCCGGCTCCGGCGGGAGAAGGGAAAAACAGAGCAGTGACAGGGCTGGCGATTGGGATGGGGATTGTTGGGTTTTTGCTGATCTTAGTGGTGGGTTTGTGGGTTTGTGGAGTGGGGAATAGGAGGAGGAGGAAGGAGAGGGAAATGGAGGAGGGATTTGAGAAACAGAGAGTGCAAGATATTGGGATTTGGAAAGGGAAAGGGAAGGAAATGGAGGTGGATTTAATGGCGGATGTGTCGGATTGTTTGGATAAATACAGAGTGTTCAAAATTGAGGAGCTTAATGAAGCGACTGATGGATTCAGCGAGAGTAGCTTGATTCAAGGGTCGGTTTATAAAGGGAAAATCGGCGGAGTTGAATATGCTATCAAGAAGATGAAGTGGAATGCCTATGAACAGCTCAAGATCTTGCAGAAGTACGGAATACTGAATAAGACAAAGGAAAAGACGGAAAGGGTCAAGAGTGCTTTCATTTTCCCACTTCCTTTTGCGGTTGGGAAGCTGAATGTAAACCATGGCAATCTAGTGAAGCTTGAAGGCTTTTGCATTGACCCTGAAGATGCAACCTGCTACCTAATTTATGAATATGTAGAGAATGGTTCTCTTTATTCATGGTTACATGGAAGCCAAAAGCATAAACTGAACTGGAGAACGAGATTGAGAATTGCGATCGATGTCGCTAACGGACTACTATACATCCACGAGCACACGAGGCCGCGGGTCGTTCACAAAGACATAAAAAGCAGCAACATTCTGCTGGATGCAAACATGAGGGCTAAGATAGCCAACTTTGGGTTGGCAAAGTCAGGGTGCAATGCCATAACAATGCACATTGTTGGAACTCAAGGCTATATAGCACCCGAATACATAGCTGATGGAGTCGTGTCGACAAAGATGGACATCTTCTCGTTCGGAGTTGTTCTGCTCGAGCTGATTTCTGGGAAGGAGGCCGTTGATGACGAAGGAGGGGTTCTATGGATAAGAGCTAATAGTGGATTTTTGGAAGGGAAGGAGAAGGAGAAGTTGGAAAGGTTGAGGAGTTGGATTGATGAAGCTCTTTTCGAGCAATCGTGCCCGATGGAGAGTTTGATGGATGTGATGAATGTGGCTGTTAGTTGCTTGCAGAAGGACCCAACGAAGAGGCCGAGCATGGTCGAGGTGGTTTATGCCCTAAGCAAGACCGATGACGCCGTGTTTGACTTCTCTGATGATAATTTATCAGCTCTTCCCTTAACAGCTAGGTAG 2019 48.49 MSMGKKRKKKKKKMKSPIRHCSSALFFFFFFIFFHLSAAQGPDADGYTCSANQTANPCQAYVFYRAAAPNFLDLAAIADLFWVSRLEISRPSKISDSNATFPLLSGQPLFIPITCSCNSVNASVSISYANLSYKINAGDNFWLVSTSKFQNLTTYQSVEIANPTLNPTNLSIGVDVVFPIFCKCPNPTQLQNRVNFMVSYVIQPADTLSSIASMFGVQTSEITAANWPNPQPFETIFIPVSRLPNLTQPIVLLPSPEQAPAPAGEGKNRAVTGLAIGMGIVGFLLILVVGLWVCGVGNRRRRKEREMEEGFEKQRVQDIGIWKGKGKEMEVDLMADVSDCLDKYRVFKIEELNEATDGFSESSLIQGSVYKGKIGGVEYAIKKMKWNAYEQLKILQKYGILNKTKEKTERVKSAFIFPLPFAVGKLNVNHGNLVKLEGFCIDPEDATCYLIYEYVENGSLYSWLHGSQKHKLNWRTRLRIAIDVANGLLYIHEHTRPRVVHKDIKSSNILLDANMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYIADGVVSTKMDIFSFGVVLLELISGKEAVDDEGGVLWIRANSGFLEGKEKEKLERLRSWIDEALFEQSCPMESLMDVMNVAVSCLQKDPTKRPSMVEVVYALSKTDDAVFDFSDDNLSALPLTAR 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24230059 24237030 + Lsi05G016580.1 Lsi05g01658 664150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01658 672 Gene3D LysM domain 197 239 IPR036779 -
Lsi05g01658 672 CDD LysM 198 226 IPR018392 -
Lsi05g01658 672 Gene3D Phosphorylase Kinase; domain 1 329 454 - -
Lsi05g01658 672 PANTHER - 427 666 - -
Lsi05g01658 672 ProSiteProfiles LysM domain profile. 198 244 IPR018392 -
Lsi05g01658 672 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 25 402 - -
Lsi05g01658 672 ProSiteProfiles Protein kinase domain profile. 349 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01658 672 PANTHER - 25 402 - -
Lsi05g01658 672 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 427 666 - -
Lsi05g01658 672 Gene3D Transferase(Phosphotransferase) domain 1 455 663 - -
Lsi05g01658 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Lsi05g01658 672 Pfam Protein tyrosine and serine/threonine kinase 427 647 IPR001245 GO:0004672|GO:0006468
Lsi05g01658 672 Pfam LysM domain 200 229 IPR018392 -
Lsi05g01658 672 SMART LysM_2 132 179 IPR018392 -
Lsi05g01658 672 SMART LysM_2 199 239 IPR018392 -
Lsi05g01658 672 SUPERFAMILY Protein kinase-like (PK-like) 343 649 IPR011009 -
Lsi05g01658 672 SMART serkin_6 359 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01658 - - - cmo:103483654 1092.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01658 Lsi-Chr5:24230059 Lsi10g00578 Lsi-Chr10:8397537 2.54E-106 dispersed
Lsi05g01658 Lsi-Chr5:24230059 Lsi01g01045 Lsi-Chr1:8661066 6.58E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83673 PF00069 Pkinase 9.10E-36 CL0016 Lsi PK