Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01670 ATGGCTCTACTACACAGTCGTTTATGCCATGCCACAAACTTCTTCGACACATTCCAAACTTCCTTCTCTGAATTCCATGGCTCTCAAGTTTTACTGAAGTACGGTTCGCCGATTGTCTTCAGAAACCGCTCTTTCTGCGCTCCGTTTTATGCTTTAACGACCGATACTTTTTCCAATCGAATTTCGTATGGGAGTGTAAGTTCACGAACACCCACCTCCCGATATAGTTTTAGGAGAAATTTATGTCGTGTTAGTTGGATAGATAGGTGGAACGAAACCGCGAAACAAAATCGCCCAAGACCCCCTCGTGCTGTGTTGGATTATCCCAGTAGCGATGAGAATGAAGTTTCAATTTCAAGTTCAGATTTGTCGAGGAGTTATAGAGCTAGTAGTCGGATTGATGATGATGGAAGAGGGGGAAGTACAATGGAGAAGATTGTGAGGAAATTGAAGAAATTTGGGTACATGGACGATGATAATAAAGAGAAGGGGCAAGAGAGAGCCATTCAAAAGGGGTCTGTGGAGGACATTTTTTATGTTGAGGAAGGAATGTTGCCTAATACTCGAGGTGGGTTTTCTAAGGAATCGCCTCTGGGAGATGAGAACATGTTTGGAAGTAATGGGGAAGGTAGGTTTCCATGGGAGAAGCCAAAAGTAAAGGAAGATGCAGATGGGGATTCAACAAGGAGAAGAGGCAGGACATCTTTGGCAGAATTGACTCTTCCTGAGCCAGAATTGAGAAGGCTGAGGAACTTGACTTTCCAAAAAAAGCACAAGATGAAGATTGGCGGTGGAGGAGTGACTCAGGCTGTTGTGGATGTCATTCATGAAAAATGGAAATCTTCCGAGATTGTGAGGCTTAAAATTGAAGGTCCTCCTGCACTTAACATGAAAAGGATGCACGAGATATTGGAGAGAAAAACTGGTGGACTGGTTATTTGGAGGTCGGGGACTTCGTTGTCTCTATATAGAGGTGTAAGCTATGAGCTTCCTGAAGCACCACAATTTAACAAACGGATTTACAAGAGAAATGTGATCACTACTTTGCCTGAAACTGATGTCAGTACTATAGTTCCTTCTGAATCTTCTTCTCACCGGAATGTTTATGAGTTGCAACAAAAAAGAGCAGAAACTTCCACCGAGGGTGACCAGTGCAGCGGACAATTGACAGAAGTACGAGTGAATTATGAGGATGAAGTAGATAAATTACTGGATAGTTTGGGTCCTAGATACACAGACTGGCCAGGATTGGATCCTTTACCTGTTGATGCAGATTTGCTCCCAGGAGTGGTTCCTGATTATGAACCTCCATTTAGAATACTTCCATATGGAGTGAGATCTTCTCTTGGAATTAAGGAGGCTACAGCCTTAAGAAGACTTGCCAGAAGACTTCCTCCTCATTTTGCACTAGGCAGAAACAGGCAGCTTCAAGGTTTAGCCGTCGCAATGGCTAAATTGTGGGAACGAAGTTCAATTGCAAAAATTGCCCTGAAACGAGGTGTGCAGCTGACTACTAGTGAAAGAATGGCTGAAGAGATCAAGAAATTGACAGGGGGCATTCTTCTGTCAAGAAACAAAGACTTTCTGGTATTCTATAGAGGAAAGAGTTTCTTGTCGCCTGAGGTCACTGAAGCTTTGCTAGAAAGGGAGAGGCTGGCAAAGTCTCTACAAGATGAAGAAGAACAGGCAAGGTTGAAAGCATCAGCCTTGGTGGTACCTGGCATTGAGAAAACAGAGCAATCTGGAACTGCTGGTTCTCTAGAGGAAACACTAGATGCTGATGCTAAATGGGGAAAGCCTCTAGATGACGAGCATAAGGAAAAAGTAATGCAGGAAGCCGAACGATTGAGGCACACTGACCTTGTTAGGAAGTTGGAACGGAAGCTTGCTTTTGCTGAAAGAAAGTTGGTGAAAGCTGAACAAGCATTATCTAAGGTAGAAGCATTTATGACACCAGCAAAGCGGCAGGCCGAACCTGATAGCATAACTGAGGAGGAAAGATTTATGTTTCGTAAGCTTGGTCTACGAATGAAAGCTTTCTTGCTTCTAGGTAGGCGTGAAGTTTTCGATGGCACAGTGGAGAATATGCACTTGCATTGGAAGTATCGTGAATTGGTGAAGATCATGATAAAAGCCAATTCCTTTGACCATGTCAAAAAAATTGCTTTGCAACTCGAAGCTGAGAGTGGGGGTGTCCTAGTTTCTATTGACAAAGTCTCCAAAGCATATGCTATAATCGTTTATCGAGGAAAGGATTATCAACGACCTTCTTTGCTGAGACCCAAGAATCTTTTGACAAAGAGGAAGGCTCTAGCACGCTCAATAGAGCTTCAAAGGCACGAGGCTTTGCTGAAACATATATCAGCAATGCAGAGTAGAGTGGACAAACTAAAATACGAAATTGAACAAATGGAGAAGGTGAAAGACCGAGGAGATGAAGTATTATACAATACACTGGATTCTGCTTATCCTAATGACAATGATTCGGAGGAAGAAGATTACGATATATATACTGAGGCATATGGTGAGGATAGTGATGTTGAAGATGAAGATAATATCACGGCTAGCGACGAGTGCCTCGAAAGGGATTTTCCAAATGGAATCCAAGTACAAGAATCTGAGGTTGAATATGAGACATCTGAATCACGTCGCATATAA 2658 42.81 MALLHSRLCHATNFFDTFQTSFSEFHGSQVLLKYGSPIVFRNRSFCAPFYALTTDTFSNRISYGSVSSRTPTSRYSFRRNLCRVSWIDRWNETAKQNRPRPPRAVLDYPSSDENEVSISSSDLSRSYRASSRIDDDGRGGSTMEKIVRKLKKFGYMDDDNKEKGQERAIQKGSVEDIFYVEEGMLPNTRGGFSKESPLGDENMFGSNGEGRFPWEKPKVKEDADGDSTRRRGRTSLAELTLPEPELRRLRNLTFQKKHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKIEGPPALNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYKRNVITTLPETDVSTIVPSESSSHRNVYELQQKRAETSTEGDQCSGQLTEVRVNYEDEVDKLLDSLGPRYTDWPGLDPLPVDADLLPGVVPDYEPPFRILPYGVRSSLGIKEATALRRLARRLPPHFALGRNRQLQGLAVAMAKLWERSSIAKIALKRGVQLTTSERMAEEIKKLTGGILLSRNKDFLVFYRGKSFLSPEVTEALLERERLAKSLQDEEEQARLKASALVVPGIEKTEQSGTAGSLEETLDADAKWGKPLDDEHKEKVMQEAERLRHTDLVRKLERKLAFAERKLVKAEQALSKVEAFMTPAKRQAEPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKKIALQLEAESGGVLVSIDKVSKAYAIIVYRGKDYQRPSLLRPKNLLTKRKALARSIELQRHEALLKHISAMQSRVDKLKYEIEQMEKVKDRGDEVLYNTLDSAYPNDNDSEEEDYDIYTEAYGEDSDVEDEDNITASDECLERDFPNGIQVQESEVEYETSESRRI 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24320545 24324980 + Lsi05G016700.1 Lsi05g01670 664162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01670 885 MobiDBLite consensus disorder prediction 838 885 - -
Lsi05g01670 885 PANTHER CRM-DOMAIN CONTAINING FACTOR CFM3A, CHLOROPLASTIC/MITOCHONDRIAL 1 881 IPR033262 GO:0000373
Lsi05g01670 885 SUPERFAMILY YhbY-like 662 759 IPR035920 -
Lsi05g01670 885 ProSiteProfiles CRM domain profile. 239 335 IPR001890 GO:0003723
Lsi05g01670 885 MobiDBLite consensus disorder prediction 838 856 - -
Lsi05g01670 885 Coils Coil 615 649 - -
Lsi05g01670 885 MobiDBLite consensus disorder prediction 213 233 - -
Lsi05g01670 885 Coils Coil 787 807 - -
Lsi05g01670 885 MobiDBLite consensus disorder prediction 207 233 - -
Lsi05g01670 885 MobiDBLite consensus disorder prediction 95 141 - -
Lsi05g01670 885 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 1 881 IPR045278 GO:0000375|GO:0003729
Lsi05g01670 885 Gene3D - 661 763 IPR035920 -
Lsi05g01670 885 Gene3D - 239 339 IPR035920 -
Lsi05g01670 885 Gene3D - 448 544 IPR035920 -
Lsi05g01670 885 SMART CRS1_YhbY_2 241 324 IPR001890 GO:0003723
Lsi05g01670 885 SMART CRS1_YhbY_2 662 749 IPR001890 GO:0003723
Lsi05g01670 885 SMART CRS1_YhbY_2 449 533 IPR001890 GO:0003723
Lsi05g01670 885 Coils Coil 542 562 - -
Lsi05g01670 885 MobiDBLite consensus disorder prediction 112 127 - -
Lsi05g01670 885 ProSiteProfiles CRM domain profile. 660 760 IPR001890 GO:0003723
Lsi05g01670 885 Pfam CRS1 / YhbY (CRM) domain 241 324 IPR001890 GO:0003723
Lsi05g01670 885 Pfam CRS1 / YhbY (CRM) domain 663 749 IPR001890 GO:0003723
Lsi05g01670 885 Pfam CRS1 / YhbY (CRM) domain 452 533 IPR001890 GO:0003723
Lsi05g01670 885 SUPERFAMILY YhbY-like 240 329 IPR035920 -
Lsi05g01670 885 ProSiteProfiles CRM domain profile. 447 544 IPR001890 GO:0003723
Lsi05g01670 885 SUPERFAMILY YhbY-like 449 540 IPR035920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01670 - - - bhj:120069423 1565.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00434 Lsi-Chr3:4916008 Lsi05g01670 Lsi-Chr5:24320545 5.90E-60 dispersed
Lsi03g00435 Lsi-Chr3:4918667 Lsi05g01670 Lsi-Chr5:24320545 1.20E-43 dispersed
Lsi03g00436 Lsi-Chr3:4920202 Lsi05g01670 Lsi-Chr5:24320545 2.47E-07 dispersed
Lsi03g01429 Lsi-Chr3:25248031 Lsi05g01670 Lsi-Chr5:24320545 1.03E-147 dispersed
Lsi05g01670 Lsi-Chr5:24320545 Lsi06g00286 Lsi-Chr6:3305872 6.95E-172 dispersed
Lsi11g00242 Lsi-Chr11:2459861 Lsi05g01670 Lsi-Chr5:24320545 3.72E-07 dispersed
Lsi05g01670 Lsi-Chr5:24320545 Lsi06g01329 Lsi-Chr6:23873869 1.43E-132 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g611 . . . . . . . . . . . Cma14g01778 . Car14g01599 . . Cpe03g01487 . . . . . . . . . . . . . . . . . Cone4ag0294 Lsi05g01670 . . Cme06g00543 . . . . . . . . . . Cmo14g01815 . . . . . . . . . . . . . Cla05g00486 Cam05g0529 Cec05g0542 Cco05g0542 Clacu05g0528 Cmu05g0500 Cre05g0567 . Csa03g01261 Chy06g00516 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011586 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30