Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01673 ATGCATAATAATGAGACTCTGACCCACGTACTTTTCAAATCAGTGGAGCTCATATTTATTTATGAACCTCCAAATTCAAACATCATCAAACAATCCAACATCCTCTTCTTCTTCCTCCGATCTCTCTGCTTTTTGAAGTTTTTCATCATGAAGCATGAAGATGGCGGTTTCGGGAAAGTTATTCCATCGTCGCACTATCTTAATCCTTCCTTCGTCGGAGGCGTCCCTGCCGCCGGAAAACGCCATTTCCGGCGAACTTCGAAGCCTGTGATCAACAATCAGAAGTTGATTCCGCATCTACGTAGGACGGAGTCCGGCCGTGTTGATTTCTTGGAGAGATTTTCGCATTATGTTGCGAGGCAATTGGGGATTTCAGATGTAAATGAGTGTCCTCAACTCTGCAAGTTAGCAAACAATTATTTGAGGAAGACGAAAGCGTGCGAGGAAGAAATTTATGCATATTTCGCTAGTGAAGCCGAGGGAGAATCTCTGTATGTGAAGTTAGTGAATGAGTTTGATCAATGCATCTTGAGTTATTTTGCATTCCATTGGAGCCAAGCTTCGTTGATGATTAATCAGGTTTTGGGTGTTGACTCCGAGCACAAGAAGCTGAAAGACCTTGTGGTGGCAGCAACTAGGAAGCAAAGATTCGATAGGGTGAGTAAGGATTTGAAAGTGACTAGGGTGTTCTCTACTTTGGTGGAGGAGATGAAGAAGATTGGCTGTGCTTCTTCTAAGGGGGAGTCAAAATGCTCCCTCGCGAAACCGCGGTCGTGTCAAAGAGAGAGGAGCCCTGTGCTTCTTCTTATGGGTGGTGGCATGGGGGCTGGCAAGAGTACTGTCCTCAAAGACATTCTCAAAGAGCCCTTCTGGTTGGAAGCTGAAACAAACACAGTGACGGTAGAGGCAGATGCCTTCAAAGAGACTGATGTTATCTACAAAGCCATCAGCTCGATGGGCTATCACGATGACATGCTCCAGACTGCTGAATTGGTACACCAGCCATCAATTGATGCTGCATCTTCGTTGCTGGTCACAGCATTAAACGATGGACGGGATGTGATATTGGACAGCACCCTGTCGTGGGAGCCGTATGTCATGCAGACGATCGAAATGGCTCGAAACATTCACAAGCGTCAATATCGAATGGGAGTTGGGTACAAGGTAGAGAATGGCAATGTCACAGAGAATTACTGGGAGCCTGTGAGTGAAGAAGAGGAAGATGGAAAAATACAAAATAGAAGGCCATATAGAATAGAGTTGGTTGGAGTTGTTTGTGATGCTCATTTAGCAGTTGTTAGAGGAATTAGCTTTACTATTGAACAGCTTAAGCCTTTCATGGTTCTAATAAAGGTTTTGATGGATTTGAACAGGAGAGCCATAATGATGGGAAGAGCTGTGAGGGTGAATTCACAGTTGCAATCCCACAAGAGATTTGCTAATGCTTTTCCAAATTACTCTGAAGTTGTTGATAGTGTCAGGCTCTATTCCACCAATTCCATTGGCAACCCACCTAAGTTGATTCATAGAAAAGATGGCGACGACCCATTTCAGATGATTGACCCGGAAGCAAATGCGTGTTTGACAACGTTGAGCAATTTGAACCCCGATGCAGAATCCGTTTATGAGCTATACCCGAACCCGAGCCCATTTTCTGAACCTGAGGCCATTTGGAACGAAATTGCTTCGACCCCATCGAGATTACATTCTCAGAAAGAGCTAAGATCTGCGATTAAAAAGCTAGAAAGTTCAAAAACAATCTCAAATGAAATTGTAGAGTGA 1782 44.16 MHNNETLTHVLFKSVELIFIYEPPNSNIIKQSNILFFFLRSLCFLKFFIMKHEDGGFGKVIPSSHYLNPSFVGGVPAAGKRHFRRTSKPVINNQKLIPHLRRTESGRVDFLERFSHYVARQLGISDVNECPQLCKLANNYLRKTKACEEEIYAYFASEAEGESLYVKLVNEFDQCILSYFAFHWSQASLMINQVLGVDSEHKKLKDLVVAATRKQRFDRVSKDLKVTRVFSTLVEEMKKIGCASSKGESKCSLAKPRSCQRERSPVLLLMGGGMGAGKSTVLKDILKEPFWLEAETNTVTVEADAFKETDVIYKAISSMGYHDDMLQTAELVHQPSIDAASSLLVTALNDGRDVILDSTLSWEPYVMQTIEMARNIHKRQYRMGVGYKVENGNVTENYWEPVSEEEEDGKIQNRRPYRIELVGVVCDAHLAVVRGISFTIEQLKPFMVLIKVLMDLNRRAIMMGRAVRVNSQLQSHKRFANAFPNYSEVVDSVRLYSTNSIGNPPKLIHRKDGDDPFQMIDPEANACLTTLSNLNPDAESVYELYPNPSPFSEPEAIWNEIASTPSRLHSQKELRSAIKKLESSKTISNEIVE 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24329694 24334774 - Lsi05G016730.1 Lsi05g01673 664165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01673 593 Pfam Zeta toxin 259 385 IPR010488 GO:0005524|GO:0016301
Lsi05g01673 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 377 IPR027417 -
Lsi05g01673 593 Gene3D - 252 511 IPR027417 -
Lsi05g01673 593 PANTHER UNCHARACTERIZED 82 585 IPR044802 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01673 - - - csv:101217085 969.918
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01673 Lsi09g01262 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01673 Lsi-Chr5:24329694 Lsi10g00457 Lsi-Chr10:6637592 3.32E-104 dispersed
Lsi05g01673 Lsi-Chr5:24329694 Lsi09g01262 Lsi-Chr9:20280009 1.11E-175 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g617 . . . . . . . . . . Cma06g01340 . Car06g01160 . . Cpe08g00310 . . . . . . . . Cla06g00639 Cam06g0683 Cec06g0686 Cco06g0692 Clacu06g0669 Cmu06g0661 Cre06g1429 . . . . Lsi05g01673 . . . . Blo07g00246 . . . . . . Sed09g0707 . . . . . . . . Bhi12g01657 Tan06g2444 Cmetu05g1440 Lac12g2207 Hepe03g0257 . Lcy13g0343 . . . . . . . Lsi09g01262 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000661 0 3 3 1 2 3 6 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 3 3 3 3 7 5 3 100