Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01674 ATGAATGAGGACTATAAAAGCATTGAACCGGGGACGGATTTAGGACTTGGCCTGGGTTACACAGACCAGTTCATTCAGGGAAGATTGACCAACAAATCAGGTGTAGGTGCAAATGCAGGTTCAATGGTGGATGTGAAATATGTTACCACCGACTCCCTGTCTGAACTAGTTTGGTCTCCACACAAAGGTTTGAGCCTTAGATGCGCTGATTCCAGCTTCAATAATAGAAAAACCTCGATCTTGTGGGATGCAGCAGCCAATAGTGCAAGTTTTGCACTGCCACAAAGTGTAATAGCTGAGAAGTCTACTTCCAATAATTTACTTGATAATAGAACTATTTTGTCACAAGCAGAGAGTCATTCGAAGAATATATCTGAGGGTAAACAAACTTCAAATAGGACCAGTTCTGACGACGCTGCCTGCATGACAGGCGAAGTACAAATGACACTGGAGAAAGGGGTGGGAAACTTTGCAAATGAAACAGTTAGCAGGGCAGAAGTGTCTGTTGTATGTTTTAAACAGGAAAATCTACAAGCAACTGGAGAAGTGGATATAACTGATGCAGGAAACGTTCTGGTGAACGAAGTATTGACAATTGGGAAAAATGACTGCTCATACTTGCCAGTTTCTGTAGACAGAATCAATGAAGTATCAATGAAACAAGATGAATCTGAGCTTGAAAAAGTGCAACATGAATTGTTAGATATGGATCCAATTGGTGGAGACATAAATGAAGATAAAAATACTACAGCTGGAAAGTTTGTTCTTCAACCCTTGAATACGTTTGAGCCTACGTTCTCTCATCCAACTTTTTTAGGGAAACTTGAATCATCTGCAGAAAATGACTTACAAAATATAAATGATAAAAATGCTGGGTGTGAGGGAAGTAAAATTATAGTGAGAGTGACGGATTCTTCCGATGAAGTGAGAGGCAGTAACCAGCAAGAAGAAAAAGATGATTGCAAAGACGGGGTTGATTCAGCTTCTCCAAGTAGTTGTGGTATGCATTGGATACAAAGGAAAGGCAAGGAAAAGGCTCTGTCTGATGGTGATGTTCATGGAAGAATGTTGAACAATGATGACTACAGCTATGGAAGTGTTGAAAGCTGTAACAGTGCTTTTCGTTCAACGTCCAAGAGGCGATGGAGCTTTGAACAACACTTAATTGTTGGGAACAAAAGAGCCAAAAAGCAAGACGATAATGCTTCTGGTCCAACGTCAAACCTTGGTCAAGATAGCTCTTTTATGAACTGGATATCTAACATGATGAAAGGATTCTCAGAGTCGATACAAGATGCGGCACCTTCTCTTGACCTTACCCTTGCAAAATGTGATGTTGAACATGGGGGCCTGAATGAAGAACCAATGGACAAGAAGATTAATGCTCCTGGGTTCAGCGGCGTTGGTTTCCAATCTATCTTCCGGTCCTTGTATAATCCAGTAATGAGAGGTGAGGAAGAAGCACCTAGTGCAACTTGTCAAGCCAAACAAGAAGCTAAGGAAATTGAAATGATTAAAAACAGTTGTGATCTTAATGCAACTCCAATAGCCTGTTTTGGAGAGTCTGATCACTTCGGCAAACAACTACTGCTGAACAATGAGAATGAGACAGAGCTTATATCTGGAAATGGACCAACCCTGCTAATACAACTGAAGAATTCACCTGAAATTTCTTGTGGCAGTCATCAAAGTCGTAAAACCAGGTCTCAGGAGAACCAGAATTCATGCAATCTTATAAGTGGTGCTGGAACAGGTGAAGCTATGCACTCTGCTTTGGGTAAGTGCAAGTCAAACAGTACAGAGAATGTTGACTGTGATCTACTATGTGGAAAGATTAACCATACTACTGGTAATGCAAGTGATCCTCTCAAAAGCTTGTGGATTTCCCGTTTTGCTGCCAAAGCATCTGGGCTTATGGCAAACCCAGAAACTTGCAACCCAAATACCAAGGATGATTCCCAATGTTCCATGCACAGCCCTAGACATATTCCTTGCCCTCAAAATCACATTGATCATCATTCCATGGATGACTTAGATACTGCTGTTAGTAAGGAACAACACAATACAGCAAATAAGGAGGCAACTCCTGGTAATAAGGAATTCAAAAGCCATAATGAGCAGAAATCCATTAGTAAGTTCAAATCTGTTTTACGTTCTCCTCAAATAAGAAGTCCAGAGGCAATGGCTTCCGTCTTTGCTAGGAGATTAGGTGCATTCAAACACATCATACCGTCAGATTTGACAGTAAATGTGGCTCATGAAACTGCGACCTGTTTCTTTTGCGGCACAAGAGGTCATACTCTACATAATTGTTCTGAAATTACAGAAGGAGAAATTGAGGATCTTTCAAGAAACATCAGGTTCTGTAACGAGACAGTTGATCCCCCTTGTTCGTGCATACGGTGCTTTCAGCTCAATCACTGGGCTATTGCATGCCCATTTGCTCCCTCGAGAGGTCAACAGCAATCTGAGTCCCATGCTTCTTTGGCTGATTGTTATGATTCTGGTGAGCTCCAACTTACTTCTGGGATCGGTTCAAGTGTAAAACCCCAACCCATTGAGGATAGAAAGATGGATGGGGTTGCATCAATTCTAGATGATACTGGCGATCCCAATATTAAAACTGATCTTAGTCTTGATTTTAAAGTCACTACTGAACAAGTGAAGTCTGCAGCAATATCGGTTCCAAAATGTGTGATTTCAAGATTTCCAGAGAAAAGTTTGAAAGGAAGTGAGATGGTACATGTTGACAGCTTTGTTGACAAGCAGAATTCCAGTATACCACAAGTGGTCTTCAACGCAGTAAAAAAACTTCGACTGTCTCGAAGCAATATTCTTAAGTGTATGAATTCCCATGTGTCACTGTCACATCTTGATGGTTTTTTCTTGCGTATTCGGCTTGGGAAGTGGGAAGAAGGATTTGGGGGGACTGGGTACCATGTGGCTTGCATAAGGGGTAAAATGTCTATTAGTGCACAACTCACAAAAAATTCTATTTCTGTTATAGTTCGAGGGGTTGAATGCCAAGTTCAGACCCAGTACATTTCCAACCATGATTTTCTTGAGGATGAGCTGAGGGCATGGTGGTGTACAGCCTCAAAAGATGGCAGCAGAGTTCTTCCTCTGGCAGCAGATTTAAGAGACAAAGTGAAAAAGAAAAAGGAGTTGGGTTTCTAA 3177 41.3 MNEDYKSIEPGTDLGLGLGYTDQFIQGRLTNKSGVGANAGSMVDVKYVTTDSLSELVWSPHKGLSLRCADSSFNNRKTSILWDAAANSASFALPQSVIAEKSTSNNLLDNRTILSQAESHSKNISEGKQTSNRTSSDDAACMTGEVQMTLEKGVGNFANETVSRAEVSVVCFKQENLQATGEVDITDAGNVLVNEVLTIGKNDCSYLPVSVDRINEVSMKQDESELEKVQHELLDMDPIGGDINEDKNTTAGKFVLQPLNTFEPTFSHPTFLGKLESSAENDLQNINDKNAGCEGSKIIVRVTDSSDEVRGSNQQEEKDDCKDGVDSASPSSCGMHWIQRKGKEKALSDGDVHGRMLNNDDYSYGSVESCNSAFRSTSKRRWSFEQHLIVGNKRAKKQDDNASGPTSNLGQDSSFMNWISNMMKGFSESIQDAAPSLDLTLAKCDVEHGGLNEEPMDKKINAPGFSGVGFQSIFRSLYNPVMRGEEEAPSATCQAKQEAKEIEMIKNSCDLNATPIACFGESDHFGKQLLLNNENETELISGNGPTLLIQLKNSPEISCGSHQSRKTRSQENQNSCNLISGAGTGEAMHSALGKCKSNSTENVDCDLLCGKINHTTGNASDPLKSLWISRFAAKASGLMANPETCNPNTKDDSQCSMHSPRHIPCPQNHIDHHSMDDLDTAVSKEQHNTANKEATPGNKEFKSHNEQKSISKFKSVLRSPQIRSPEAMASVFARRLGAFKHIIPSDLTVNVAHETATCFFCGTRGHTLHNCSEITEGEIEDLSRNIRFCNETVDPPCSCIRCFQLNHWAIACPFAPSRGQQQSESHASLADCYDSGELQLTSGIGSSVKPQPIEDRKMDGVASILDDTGDPNIKTDLSLDFKVTTEQVKSAAISVPKCVISRFPEKSLKGSEMVHVDSFVDKQNSSIPQVVFNAVKKLRLSRSNILKCMNSHVSLSHLDGFFLRIRLGKWEEGFGGTGYHVACIRGKMSISAQLTKNSISVIVRGVECQVQTQYISNHDFLEDELRAWWCTASKDGSRVLPLAADLRDKVKKKKELGF 1058
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24347495 24352927 - Lsi05G016740.1 Lsi05g01674 664166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01674 1058 ProSiteProfiles Zinc finger CCHC-type profile. 758 773 IPR001878 GO:0003676|GO:0008270
Lsi05g01674 1058 Pfam Plus-3 domain 935 1030 IPR004343 GO:0003677
Lsi05g01674 1058 SMART rtf1 929 1034 IPR004343 GO:0003677
Lsi05g01674 1058 MobiDBLite consensus disorder prediction 393 413 - -
Lsi05g01674 1058 ProSiteProfiles Plus3 domain profile. 929 1058 IPR004343 GO:0003677
Lsi05g01674 1058 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 56 1058 - -
Lsi05g01674 1058 MobiDBLite consensus disorder prediction 118 138 - -
Lsi05g01674 1058 Gene3D - 930 1055 IPR036128 GO:0003677
Lsi05g01674 1058 SMART c2hcfinal6 798 814 IPR001878 GO:0003676|GO:0008270
Lsi05g01674 1058 SMART c2hcfinal6 757 773 IPR001878 GO:0003676|GO:0008270
Lsi05g01674 1058 SUPERFAMILY Plus3-like 931 1055 IPR036128 GO:0003677
Lsi05g01674 1058 MobiDBLite consensus disorder prediction 303 334 - -
Lsi05g01674 1058 MobiDBLite consensus disorder prediction 686 707 - -
Lsi05g01674 1058 Gene3D - 748 816 - -
Lsi05g01674 1058 PANTHER UNCHARACTERIZED 56 1058 - -
Lsi05g01674 1058 MobiDBLite consensus disorder prediction 310 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01674 - - - csv:101216376 1820.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g618 . . . . . Bpe14g01228 . . . . . Cma14g01781 . Car14g01602 . . Cpe03g01490 . . . . . . . . . . . . . . Cone14ag0137 Cone15ag0142 Cone7ag0299 Cone4ag0300 Lsi05g01674 . . Cme06g00540 . . Bda11g00614 Bda13g00089 . Bpe13g00571 Bma02g00807 . . . Cmo14g01817 . . . . . . . . . . . . . Cla05g00483 Cam05g0526 Cec05g0539 Cco05g0539 Clacu05g0525 Cmu05g0497 Cre05g0564 . Csa03g01258 Chy06g00513 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004918 3 0 0 1 2 1 1 1 1 1 1 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 1 5 5 1 40