Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01678 ATGATTAAGTTCCATGAAAGGCATTGGTATAGTTTCGTCAATCCTTTCTCAAATGCAGAAGCTAGGTTTGTCAAAAACTTAATGGGACTCTCTGGTCTCTCTGTTCGAGAGGATGCTGTTGGTAACATATTCGGTAGATGGGATGGCTCTGAACCAGAGCTTCCTGCGGTTGCTACAGGATCTCATGTTGATGCAATTCCATTCTCTGGGAAGTATGATGGAGTTGTTGGAGTTTTAGGTGCTTTAGAAGCCATCAACGTCTTGAAAAGGTCCGGGTTTAAACCTAAGAGGTCTCTGGAAATTATCTTCTTCACCTCTGAGGAACCTACACGCTTTGGAATCAGCTGCTTGGGTAGCCGCTTGTTGGCAGGGAGTGATGTACTTGCTAAAGCCTTGGAAACAACTGTTGATGGTCAGAATATATCTTTTATTGATGCTGCTAGTTCTGCTGGCTACTTAACCGATCCAGCTCAGATATCAACTGTGTTTTTAAAGAAAGGAAGTTACTCTGCTTTCCTGGAATTGCACATAGAGCAGGGTCCCATTCTGGAGGAAGAAGGTATATCTATTGGAGTTGTGACTGCAATTGCAGCCCCTGCTAGTCTGAAGGTGGAGTTTGAAGGCACTGGTGGCCATGCTGGTGCTGTCCTGATGCCATATAGAAATGACGCTGGACTGGCAGCAGCTGAGCTAGCACTAGCAGTTGAGAAGCATGTATTGAACTCTGGATCTATCGACACTGTCGGTACCGTTGGTATCCTGGAGCTTCATCCTGGAGCAATCAACAGCATCCCAAGCAAATCACATCTGGAAATAGACACTAGAGACATTGATGAAGAGCGTAGAAACACTGTAATTAAGAAGATTCGTGAATCTGCCAATGAAATAGCTAAAAGGCGACGAGTCAAACTATCAGAATTCAAAATTATAAACCAGGACCCGCCAGCACATTCTGAGAAATCAATAATAGAGGCTATGGTTTCTGCAACGAAAGATCTCAATCTCACACACAAACTGATGATTAGTAGAGCATACCATGATTCGCTGTTTATGGCCAGGATATCCCCAATGGGTATGATATTCATTCCTTGCTATAAAGGGTACAGCCACAAGCCAGAAGAATTCGCCTCTCCAAAGGATATGTCAAATGGAGTCAAGGTACTGGCCCTTACCCTTGCCAAATTGTCGCAGCAGTGA 1197 44.19 MIKFHERHWYSFVNPFSNAEARFVKNLMGLSGLSVREDAVGNIFGRWDGSEPELPAVATGSHVDAIPFSGKYDGVVGVLGALEAINVLKRSGFKPKRSLEIIFFTSEEPTRFGISCLGSRLLAGSDVLAKALETTVDGQNISFIDAASSAGYLTDPAQISTVFLKKGSYSAFLELHIEQGPILEEEGISIGVVTAIAAPASLKVEFEGTGGHAGAVLMPYRNDAGLAAAELALAVEKHVLNSGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEERRNTVIKKIRESANEIAKRRRVKLSEFKIINQDPPAHSEKSIIEAMVSATKDLNLTHKLMISRAYHDSLFMARISPMGMIFIPCYKGYSHKPEEFASPKDMSNGVKVLALTLAKLSQQ 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24377524 24381923 - Lsi05G016780.1 Lsi05g01678 664170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01678 398 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 22 394 IPR010158 GO:0016813
Lsi05g01678 398 Pfam Peptidase family M20/M25/M40 59 393 IPR002933 GO:0016787
Lsi05g01678 398 PANTHER ALLANTOATE DEIMINASE-RELATED 15 393 IPR010158 GO:0016813
Lsi05g01678 398 PIRSF Amidase_hyd_carb 6 398 IPR010158 GO:0016813
Lsi05g01678 398 Pfam Peptidase dimerisation domain 200 299 IPR011650 -
Lsi05g01678 398 CDD M20_bAS 22 393 - -
Lsi05g01678 398 PANTHER ALLANTOATE DEIMINASE-RELATED 15 393 - -
Lsi05g01678 398 SUPERFAMILY Zn-dependent exopeptidases 18 395 - -
Lsi05g01678 398 Gene3D Zn peptidases 19 388 - -
Lsi05g01678 398 SUPERFAMILY Bacterial exopeptidase dimerisation domain 201 311 IPR036264 -
Lsi05g01678 398 Gene3D - 198 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01678 K18151 UAH; ureidoglycolate amidohydrolase [EC:3.5.1.116] - csv:101216373 695.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00543 Lsi-Chr2:4705307 Lsi05g01678 Lsi-Chr5:24377524 4.94E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g622 . . . . . Bpe14g01231 . . . . . . Car06g01157 . . Cpe08g00313 . . . . . . . . . . . . . . . . Cone15ag0143 . . Lsi05g01678 . . Cme06g00537 Blo02g00611 . . Bda13g00085 . . Bma02g00804 . . Cmo06g01351 . . . . . . . . . . . . . . Cla05g00480 Cam05g0522 Cec05g0535 Cco05g0536 Clacu05g0522 Cmu05g0494 Cre05g0560 . Csa03g01255 Chy06g00509 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011290 1 0 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 31