Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01692 ATGAAGTCAGAATCATCAGAAGGTGTGTATGTTAGCCATGTCCGACCATTTCAAACTCTAATAAACAGAACCCAAATTCTGCTTCACTCCATTGCTCTGCTGCTCTTAATTTTCTATAGACTTTCCTTTTTCTTCCTAAATCAACAATCCAAACTCTTCTTCCCTTGGCTTTTGGTTTTCGCTTCTGAGCTTCTTCTTGCTTTCATTTGGTTACTTGGCCGAGCCTCACGATGGCGCCCCCAAATTTCCAAACACATCATACTTCCGCCGGAACAACAGAGGCCGCAGCTTCCGCTTCCCCCTTTAGACGTCTTTATTTGCACCGCCGATCCGGAGAAAGAGCCCACCCTCGAAGTTATGAACACTTTGATTTCGGCCATGGCTTTGGACTACCCGCCCCATAACCTCCACCTTTACTTTTCCGACGACGGTGGCTCTCCGGTCACTTTACGTGGGATCAGAGAAGCAAGGCGGTTTGCACACTGGTGGGTCCCCTTCTGCAGAAAGTACGGAATTACGCAGCCGTGTCCCGCGGCTTATTTCTCGCCTGCCGGAGAAGATCGCCGCCGTGATATTCCGACGGATGAATTTCTGGAGCAGAGGCTAATTGTGAAAGAAAAATACGAAGAGTTTAAGGATGGGATTAGGGATGGAACGAAAAGATGGGTTGAAGAAACCGCCGTTAGCTCTCGTGATGAGCACCCTGCATTAGTCCAGGTTTGTCTTTTACCCGATGGAGATGAAGATGAGGAATCAATAAATCAAATCCAACTTCCTCAAATTGTCTACGTATCTCGTGAGAAAAAACCTTCACATCCCCACCATTTCAAGGCTGGGGCCCTTAATGTTCTTTTCCCTCAGAAGTTCTATACTGCCACCAAAAACGACATCTACGATAGCCAACTCAGATCTATCTTCACGGTGGAATGGTCCGGCATGAATGGCCTTCAAGGCCCTATTCTCTCCGGCACATGCTTTTACATCAACAGGCTTTCCTTGTATGGAACTTCTCCGCATGAAGATGACATTACACAATTTAAAGTAAAAATAAAAGAAAAAATATTTGATATAGATCTTTCAAAGCATAGAGAAGATTTTGGGGTGTCGAACGAGACGTTCTTGAAATCTATAAACGGGAATAATAGATCAAGAGATTTTGCAGTAGAAGAGGCTCAACATTTAGCTTCATGCACCTACGAAAATGGAAGTAAATGGGGTCAAAAGGTCATAACTTCAACTTTTACACCACCAGTGTTACTCCGTTTAGTTGGGTTTCTTTACGATTCAGTGGTGGAGGATTTCTTGACAAGTCTGATTTTACATAGCCGAGGTTGGAGATCGGTGTTTAGCAATCCAGAGAGGGCACAATTCTTAGGGAGTGGCACTACAACTCTAAACGAGGCGTTGGTTCAAGGAACAAGATGGAGCTCAGGATTGTTGGAAGTCGCCATTTCAAGGTTTTGCCCTCTGTTTTATGCCTGTCGAACACCAATGATCAGTCTGCTTCAGACCATGTGTTATGCTGAGCTTGCCTTTTATCCTCTTTGTTCTTTCTCCATATGGACTTTAGCTACCATCCCTCAGCTCTGTTTGCTGCTTCGGATACCTGTTTTCCCTAAGGTTTCAAGTCCATTCTTCCTAGTATATTGCTTCATCTTCATTTCAGCATTATCCTTTCACTTGCACGAGGTTCTAATTTCAGGAGGATCAATTAAAAAATGGCTAAACGAACAGAGGATATGGATGATAAAGGGAATCACCGCTCGTTTCTATGGAAGTTTAGATGCTTTGATGAAGAAAATTGGGTTGAGAAATGCTAGTTTTGTGCCCACAAACAAAGGTATAGATGATGACCAAATCAAGAGGTACAATATGGACATGTATGATTTTCAAGCTTCAAGCTTGTTTCTTGCTCCAATGGCGGGCCTTGTCTTCTTGAATCTCGTCGCCTTTGCAATCGGATTCGGGAGAATCGTAGGGAGTCTAGAAGATTTGGAGGAAACATTTGGGCAACTTTTTCTTTGCTTCTATATATTGTTGATGAGTTTCCCCATCATTGAGGCGATGGTTATAAGAACTGATAAAGCTTGCTTTCCATTTAAAGTCACTTTAGGATCCGCAGTGGTTGTGTTGCTATTTTTGTATTTGGAGTCTATTCTCTTTATGTAA 2169 43.25 MKSESSEGVYVSHVRPFQTLINRTQILLHSIALLLLIFYRLSFFFLNQQSKLFFPWLLVFASELLLAFIWLLGRASRWRPQISKHIILPPEQQRPQLPLPPLDVFICTADPEKEPTLEVMNTLISAMALDYPPHNLHLYFSDDGGSPVTLRGIREARRFAHWWVPFCRKYGITQPCPAAYFSPAGEDRRRDIPTDEFLEQRLIVKEKYEEFKDGIRDGTKRWVEETAVSSRDEHPALVQVCLLPDGDEDEESINQIQLPQIVYVSREKKPSHPHHFKAGALNVLFPQKFYTATKNDIYDSQLRSIFTVEWSGMNGLQGPILSGTCFYINRLSLYGTSPHEDDITQFKVKIKEKIFDIDLSKHREDFGVSNETFLKSINGNNRSRDFAVEEAQHLASCTYENGSKWGQKVITSTFTPPVLLRLVGFLYDSVVEDFLTSLILHSRGWRSVFSNPERAQFLGSGTTTLNEALVQGTRWSSGLLEVAISRFCPLFYACRTPMISLLQTMCYAELAFYPLCSFSIWTLATIPQLCLLLRIPVFPKVSSPFFLVYCFIFISALSFHLHEVLISGGSIKKWLNEQRIWMIKGITARFYGSLDALMKKIGLRNASFVPTNKGIDDDQIKRYNMDMYDFQASSLFLAPMAGLVFLNLVAFAIGFGRIVGSLEDLEETFGQLFLCFYILLMSFPIIEAMVIRTDKACFPFKVTLGSAVVVLLFLYLESILFM 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24471802 24477861 + Lsi05G016920.1 Lsi05g01692 664184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01692 722 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 283 721 - -
Lsi05g01692 722 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 16 284 - -
Lsi05g01692 722 Pfam Cellulose synthase 349 713 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi05g01692 722 Pfam Cellulose synthase 102 284 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi05g01692 722 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN G2 16 284 - -
Lsi05g01692 722 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN G2 283 721 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01692 - - - bhj:120069487 1072.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01692 Lsi-Chr5:24471802 Lsi07g00743 Lsi-Chr7:8124700 9.61E-127 dispersed
Lsi05g01692 Lsi-Chr5:24471802 Lsi09g01256 Lsi-Chr9:20215506 1.85E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g637 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00642 Cam06g0687 Cec06g0689 Cco06g0696 Clacu06g0673 Cmu06g0664 Cre06g1432 . . . . Lsi05g01692 . . . . . . . . . . . . . . . . . . . . Bhi12g01651 . . Lac12g2203 . . Lcy13g0346 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007282 0 2 0 0 0 1 0 1 1 1 1 1 2 1 1 0 1 2 0 1 1 2 1 2 2 3 3 2 0 4 36