Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01693 ATGAAACTTTCTCGTCTAAATTCCCTCCGGCGAGTTCAGTCCGGCGAGCTTATCATGAAGCTCCCCGACGACCTGGACGATTCCAAAAGACCCCAATTCCCTCTCGATTCCACCTCTTACAAAATCATCGACGAAATTGGGGTCGGCGTCAGCGCCGTCGTGTATAAAGCCATCTGCATTCCGATGAACTCTGCAGTGGTGGCCATCAAAGCCATCGATCTCGATCGATCACGAGCAGATTTCGATGACATTCGAAGAGAAGCCAAAATTCTCTCACTTCTCTCTCACCCCAACATTCTAAATGCTCACTGTTCTTTCACTGTCGATCGTCGTCTTTGGGTCGTAATGCCGTTCATGTCCGCTGGATCTTTACAGTCAATTATTGCGTCGTCGTTTCCTGATGGCTTGCCCGAACCCTGCATCGCCGTTGTTCTCCGGGAAATTCTACACGCTCTGTCTTACCTCCACGACCAAGGTCATCTTCATCGCGATATTAAAGCCGGCAACATTCTGATGGACTCAAATGGGTCTGTCAAGCTCGCTGATTTTGGAGTTTCGGCGTCGATTTTCGAGGCGAATTCGAAACAGGGGATGTCAATTTCTCCGTTATCGACGTCGATGATGCTGAAGGAAGTCGCCGGAACGCCGTATTGGATGGCGCCGGAGGTGATTCACTCGCATAACGGGTATAGTTTGAAAGCGGATATATGGTCATTTGGAATCACGGCGTTGGAATTAGCCCATGGACGACCTCCGCTGTCTCATCTCCCTCCTTCCAAATCCCTGCTTCTGAAAATCACGCGGAGGTTTCGATTCTCCGATTACGAGAACCACCGCAACTGCAGAAACAAAAACAAATTCTCAAAAGGGTTTAAGGAATTGGTAGCCTCTTGCCTCGATCAAGAGCCATCTAGAAGACCCTGCGCCGAGAAATTGCTCAAACATTCGTTCTTCAAAAACTGCAAGGGGCCTGATCTTCTCGTAAAGACAATATTACAAGGTTTGCCGAGCGTGGAAGAGCGATTCAAATTGGGAAAATTACAGCGATTGCCGTCGATGAAAACTGAGGAAGAAGAGGAGGAAGAAGAATTAGAGAAGGAGATTATAAAACAGAGGAGGATCAGTGGGTGGAATTTCAACGAGGATGTGCTAGAGCTGGACCCTGTTTTTCCAGGGGAAAACTGCGTGGAAGAATGTTCGATCATGGAGGAGAAGGGTTCGGGGGATTCGAGCGAGTGCTGTTCGGGGCTGTCGGATCTAAGTTCGCCGGTGGGGAACGAGAGGGGCGGCGGCGGTGGCGGAGGGGAGGAGGAGGTTGTTGACAGAGAGTCGATAGTGGGGGGATTGATAGCGCTGAAAAGGAGCTTAGATGAGCAGAGGAGGGCGGTGGGGAGTTTGATAGAGCTGATGGAAGGGGAGAAAGGGGGAGAGATGAGCAGAGAGGAGCAGATGGGGAGATTGATGGAGAAGATGACGAGGGAGTTGGAGAATGAAAGGAAGAGGAACTTTGAATTGGAGATGGAGTTGGAATTTCTTAGGATTCAGATTTCTGCTGCTTATAATAATAACAATAATGGTGGTGCTTTAACCGCCATTAATAACTGA 1605 49.16 MKLSRLNSLRRVQSGELIMKLPDDLDDSKRPQFPLDSTSYKIIDEIGVGVSAVVYKAICIPMNSAVVAIKAIDLDRSRADFDDIRREAKILSLLSHPNILNAHCSFTVDRRLWVVMPFMSAGSLQSIIASSFPDGLPEPCIAVVLREILHALSYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSASIFEANSKQGMSISPLSTSMMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYENHRNCRNKNKFSKGFKELVASCLDQEPSRRPCAEKLLKHSFFKNCKGPDLLVKTILQGLPSVEERFKLGKLQRLPSMKTEEEEEEEELEKEIIKQRRISGWNFNEDVLELDPVFPGENCVEECSIMEEKGSGDSSECCSGLSDLSSPVGNERGGGGGGGEEEVVDRESIVGGLIALKRSLDEQRRAVGSLIELMEGEKGGEMSREEQMGRLMEKMTRELENERKRNFELEMELEFLRIQISAAYNNNNNGGALTAINN 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24479118 24480722 + Lsi05G016930.1 Lsi05g01693 664185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01693 534 Gene3D Transferase(Phosphotransferase) domain 1 122 372 - -
Lsi05g01693 534 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01693 534 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Lsi05g01693 534 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
Lsi05g01693 534 Coils Coil 481 515 - -
Lsi05g01693 534 SMART serkin_6 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01693 534 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 27 523 - -
Lsi05g01693 534 Coils Coil 347 374 - -
Lsi05g01693 534 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 27 523 - -
Lsi05g01693 534 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01693 534 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01693 Lsi09g01255 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01693 Lsi-Chr5:24479118 Lsi03g01252 Lsi-Chr3:23117627 2.85E-11 dispersed
Lsi02g01568 Lsi-Chr2:21541017 Lsi05g01693 Lsi-Chr5:24479118 4.82E-111 transposed
Lsi04g01186 Lsi-Chr4:17627287 Lsi05g01693 Lsi-Chr5:24479118 3.85E-46 transposed
Lsi04g02056 Lsi-Chr4:27651323 Lsi05g01693 Lsi-Chr5:24479118 9.16E-63 transposed
Lsi07g01113 Lsi-Chr7:16576131 Lsi05g01693 Lsi-Chr5:24479118 6.81E-107 transposed
Lsi05g01693 Lsi-Chr5:24479118 Lsi09g01255 Lsi-Chr9:20212599 2.36E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83674 PF00069 Pkinase 2.90E-58 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01693 K08835 - csv:101215648 911.753