Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01693 ATGAAACTTTCTCGTCTAAATTCCCTCCGGCGAGTTCAGTCCGGCGAGCTTATCATGAAGCTCCCCGACGACCTGGACGATTCCAAAAGACCCCAATTCCCTCTCGATTCCACCTCTTACAAAATCATCGACGAAATTGGGGTCGGCGTCAGCGCCGTCGTGTATAAAGCCATCTGCATTCCGATGAACTCTGCAGTGGTGGCCATCAAAGCCATCGATCTCGATCGATCACGAGCAGATTTCGATGACATTCGAAGAGAAGCCAAAATTCTCTCACTTCTCTCTCACCCCAACATTCTAAATGCTCACTGTTCTTTCACTGTCGATCGTCGTCTTTGGGTCGTAATGCCGTTCATGTCCGCTGGATCTTTACAGTCAATTATTGCGTCGTCGTTTCCTGATGGCTTGCCCGAACCCTGCATCGCCGTTGTTCTCCGGGAAATTCTACACGCTCTGTCTTACCTCCACGACCAAGGTCATCTTCATCGCGATATTAAAGCCGGCAACATTCTGATGGACTCAAATGGGTCTGTCAAGCTCGCTGATTTTGGAGTTTCGGCGTCGATTTTCGAGGCGAATTCGAAACAGGGGATGTCAATTTCTCCGTTATCGACGTCGATGATGCTGAAGGAAGTCGCCGGAACGCCGTATTGGATGGCGCCGGAGGTGATTCACTCGCATAACGGGTATAGTTTGAAAGCGGATATATGGTCATTTGGAATCACGGCGTTGGAATTAGCCCATGGACGACCTCCGCTGTCTCATCTCCCTCCTTCCAAATCCCTGCTTCTGAAAATCACGCGGAGGTTTCGATTCTCCGATTACGAGAACCACCGCAACTGCAGAAACAAAAACAAATTCTCAAAAGGGTTTAAGGAATTGGTAGCCTCTTGCCTCGATCAAGAGCCATCTAGAAGACCCTGCGCCGAGAAATTGCTCAAACATTCGTTCTTCAAAAACTGCAAGGGGCCTGATCTTCTCGTAAAGACAATATTACAAGGTTTGCCGAGCGTGGAAGAGCGATTCAAATTGGGAAAATTACAGCGATTGCCGTCGATGAAAACTGAGGAAGAAGAGGAGGAAGAAGAATTAGAGAAGGAGATTATAAAACAGAGGAGGATCAGTGGGTGGAATTTCAACGAGGATGTGCTAGAGCTGGACCCTGTTTTTCCAGGGGAAAACTGCGTGGAAGAATGTTCGATCATGGAGGAGAAGGGTTCGGGGGATTCGAGCGAGTGCTGTTCGGGGCTGTCGGATCTAAGTTCGCCGGTGGGGAACGAGAGGGGCGGCGGCGGTGGCGGAGGGGAGGAGGAGGTTGTTGACAGAGAGTCGATAGTGGGGGGATTGATAGCGCTGAAAAGGAGCTTAGATGAGCAGAGGAGGGCGGTGGGGAGTTTGATAGAGCTGATGGAAGGGGAGAAAGGGGGAGAGATGAGCAGAGAGGAGCAGATGGGGAGATTGATGGAGAAGATGACGAGGGAGTTGGAGAATGAAAGGAAGAGGAACTTTGAATTGGAGATGGAGTTGGAATTTCTTAGGATTCAGATTTCTGCTGCTTATAATAATAACAATAATGGTGGTGCTTTAACCGCCATTAATAACTGA 1605 49.16 MKLSRLNSLRRVQSGELIMKLPDDLDDSKRPQFPLDSTSYKIIDEIGVGVSAVVYKAICIPMNSAVVAIKAIDLDRSRADFDDIRREAKILSLLSHPNILNAHCSFTVDRRLWVVMPFMSAGSLQSIIASSFPDGLPEPCIAVVLREILHALSYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSASIFEANSKQGMSISPLSTSMMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYENHRNCRNKNKFSKGFKELVASCLDQEPSRRPCAEKLLKHSFFKNCKGPDLLVKTILQGLPSVEERFKLGKLQRLPSMKTEEEEEEEELEKEIIKQRRISGWNFNEDVLELDPVFPGENCVEECSIMEEKGSGDSSECCSGLSDLSSPVGNERGGGGGGGEEEVVDRESIVGGLIALKRSLDEQRRAVGSLIELMEGEKGGEMSREEQMGRLMEKMTRELENERKRNFELEMELEFLRIQISAAYNNNNNGGALTAINN 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24479118 24480722 + Lsi05G016930.1 Lsi05g01693 664185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01693 534 Gene3D Transferase(Phosphotransferase) domain 1 122 372 - -
Lsi05g01693 534 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01693 534 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Lsi05g01693 534 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
Lsi05g01693 534 Coils Coil 481 515 - -
Lsi05g01693 534 SMART serkin_6 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01693 534 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 27 523 - -
Lsi05g01693 534 Coils Coil 347 374 - -
Lsi05g01693 534 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 27 523 - -
Lsi05g01693 534 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01693 534 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01693 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101215648 911.753
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01693 Lsi09g01255 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01693 Lsi-Chr5:24479118 Lsi03g01252 Lsi-Chr3:23117627 2.85E-11 dispersed
Lsi02g01568 Lsi-Chr2:21541017 Lsi05g01693 Lsi-Chr5:24479118 4.82E-111 transposed
Lsi04g01186 Lsi-Chr4:17627287 Lsi05g01693 Lsi-Chr5:24479118 3.85E-46 transposed
Lsi04g02056 Lsi-Chr4:27651323 Lsi05g01693 Lsi-Chr5:24479118 9.16E-63 transposed
Lsi07g01113 Lsi-Chr7:16576131 Lsi05g01693 Lsi-Chr5:24479118 6.81E-107 transposed
Lsi05g01693 Lsi-Chr5:24479118 Lsi09g01255 Lsi-Chr9:20212599 2.36E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g641 . . . . . . . . . . . Cma14g01789 . Car14g01610 . . Cpe03g01498 . . . . . . . Cla06g00643 Cam06g0688 Cec06g0690 Cco06g0697 Clacu06g0674 Cmu06g0665 Cre06g1433 . . . Cone4ag0304 Lsi05g01693 . Chy05g00345 Cme06g00521 . . . . . . . . . . Cmo14g01826 . . . Car17g00157 . . . . . . . . . Cla05g00470 Cam05g0511 Cec05g0525 Cco05g0526 Clacu05g0512 Cmu05g0488 Cre05g0552 Lsi09g01255 Csa03g01242 Chy06g00495 Cme05g00538
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT1G53165 66.8 7.9e-199 690.6
Lsi04g01186 . 269 523 MAP Kinase Kinase Kinase Kinase AT1G53165 51.2 1.7e-60 231.1
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT3G15220 68.6 8.2e-204 707.2
Lsi04g01186 . 4 523 MAP Kinase Kinase Kinase Kinase AT1G69220 57.7 7.0e-138 488.4
Lsi04g01185 . 38 357 MAP Kinase Kinase Kinase Kinase AT1G69220 53.3 4.6e-81 299.7
Lsi04g02056 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 1.3e-67 255.0
Lsi02g01568 . 1 666 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.4e-245 845.9
Lsi05g01693 CCT 25 380 MAP Kinase Kinase Kinase Kinase AT5G14720 50.4 9.5e-96 348.2
Lsi07g01113 . 7 702 MAP Kinase Kinase Kinase Kinase AT4G24100 63.8 1.0e-236 816.6
Lsi07g01113 . 11 695 MAP Kinase Kinase Kinase Kinase AT4G10730 66.9 6.4e-249 857.1
Lsi03g01252 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 62.0 2.1e-131 466.5
Lsi07g01113 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.5 2.3e-117 419.9
Lsi03g01252 . 1 584 MAP Kinase Kinase Kinase Kinase AT1G79640 58.2 1.6e-201 699.5
Lsi02g01568 . 6 585 MAP Kinase Kinase Kinase Kinase AT1G79640 50.3 5.5e-157 551.6
Lsi02g01568 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.7e-103 371.7
Lsi03g01252 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.8e-87 318.5
Lsi07g01113 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 3.9e-75 279.3
Lsi05g01693 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.7 4.8e-142 501.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013881 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83674 PF00069 Pkinase 2.90E-58 CL0016 Lsi PK