Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01694 ATGGAGAGGAACTGTTTACGCACCGTGTATCGTACGAGTTTAACAACAATGAACACGACGATCGGTGGAGGAGCCAACCCCGCCAACGCTGCCGTGAAAAGCCAGAGGAACAAGCTGTGCCGGATGGCGGAGGAGGATTTCATAAATGGGATTTCATGGCCTCCAAGAAGTTACACGTGCAACTTTTGCAAAAGGGAATTTAGATCAGCTCAAGCTCTTGGTGGTCATATGAATGTTCATAGGAGAGATAGAGCTTTGCTTTATTCTCCCCCAGCTGATGGTCAGTTCACAAATCTCAATCTTAACCTTCACCATAACCCTAACCCTAATATCCCATCTCACGACGATGTTGCATTCGTCGGTCGAAAAGCTTTGGATTTGAAATCGTCGACCGACATTGCGAAACCTAATATGTTTGAGAGAGCTCATTGGAGGAAGGGTGAGAAATTCAATATTGGGTTGGAAATTGAAATCAGTACTACTAATAAGACTACTTCTTCTACCAATGTACTTACTGACTCCAAGAAGGACATTGATTTGGAGCTTCGATTAGGGTACTCAACTTAG 567 44.09 MERNCLRTVYRTSLTTMNTTIGGGANPANAAVKSQRNKLCRMAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHHNPNPNIPSHDDVAFVGRKALDLKSSTDIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24483621 24484187 + Lsi05G016940.1 Lsi05g01694 664186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01694 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Lsi05g01694 188 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 34 187 - -
Lsi05g01694 188 PANTHER OS07G0101800 PROTEIN 34 187 - -
Lsi05g01694 188 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lsi05g01694 188 Gene3D Classic Zinc Finger 51 90 - -
Lsi05g01694 188 Pfam C2H2-type zinc finger 58 82 - -
Lsi05g01694 188 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Lsi05g01694 188 SMART c2h2final6 58 80 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01694 - - - csv:101215415 296.204
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01449 Lsi-Chr1:12628981 Lsi05g01694 Lsi-Chr5:24483621 3.50E-19 dispersed
Lsi05g01694 Lsi-Chr5:24483621 Lsi07g01211 Lsi-Chr7:17673824 1.05E-16 dispersed
Lsi05g01694 Lsi-Chr5:24483621 Lsi05g01695 Lsi-Chr5:24493294 4.66E-10 tandem
Lsi05g00997 Lsi-Chr5:17422250 Lsi05g01694 Lsi-Chr5:24483621 1.26E-19 wgd
Lsi05g01694 Lsi-Chr5:24483621 Lsi09g01253 Lsi-Chr9:20202819 5.16E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g643 . . . . . . . . . . . . . Car14g01611 . . Cpe03g01499 . . . . . . . . . . . . . . . . . . Lsi05g01694 . . . . . . . . . . . . . Cmo14g01827 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012411 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25401 PF13912 zf-C2H2_6 5.60E-07 CL0361 Lsi TF