Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g01697 | ATGTCCTTTGTCGTTAGTACTAAGGTGGGGTTGTCCGGGGTTGATCATCATCACCCGGCGGCGATCAACAACTCTCCCATCTTCAAACAAAGCGATGAAAACAGCGGTGGTAGTAGAGACGACGATGACGACGACAACAACCGCGACGAGCCTAGAGAAGGCGCGGTGGAGGCCGGAACACGGAGGCCAAGAGGCCGTCCACCTGGATCTAAAAACAAACCCAAACCCCCAATCTTCGTCACACGTGACAGTCCCAACGCCCTTCGGAGCTACGTCCTAGAGGTAGCCGCCGGATCCGACGTGGCGGACTCCATCGCTCAATTCGCCCGTAAACGCCAGCGTGGCGTCTGCGTCCTCAGTGCAACCGGCTTAGTCGCTAACGTCACCTTACGTCAGCCCGCTGCTCCCGGTTCCGTAATGCCACTCCAAGGAAGGTTTGAGATTCTCTCTTTAACCGGCGCTTTTTTACCCGGTCCGGCCCCACCTGGTTCTACTGGCCTGACCGTTTACTTGTCCGGCGGTCAGGGGCAGGTCGTCGGTGGGAGCGTCGTTGGCTCACTTGTGGCTGCCGGACCCATTATGGTAATTGCAGCCACTTTTGCTAATGCCACTTATGAAAGGTTGCCTCTTGAAGATCCCGACGACCATGAAGTTGGAAGTGGCTCCGCCTCACACGGCGGTCCTAGAAGTCCTCCGCCGGAAATTAGAGCCACTGGAGGAGGGCAGATGCCAACTGGGATGCCGGAACCGACTTTGCCGTTGTATAATTTACTGCCGGATATGATTCCCAACGGCGTTCAGCTTGGCCACGACGGGTATGCTTATGTCCGGCCGCCGTATTGA | 843 | 56.94 | MSFVVSTKVGLSGVDHHHPAAINNSPIFKQSDENSGGSRDDDDDDNNRDEPREGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFANATYERLPLEDPDDHEVGSGSASHGGPRSPPPEIRATGGGQMPTGMPEPTLPLYNLLPDMIPNGVQLGHDGYAYVRPPY | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 24537270 | 24539583 | - | Lsi05G016970.1 | Lsi05g01697 | 664189 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g01697 | 280 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
Lsi05g01697 | 280 | Gene3D | - | 88 | 217 | - | - | |
Lsi05g01697 | 280 | MobiDBLite | consensus disorder prediction | 211 | 248 | - | - | |
Lsi05g01697 | 280 | CDD | DUF296 | 89 | 171 | IPR005175 | - | |
Lsi05g01697 | 280 | PIRSF | ESCAROLA | 5 | 279 | IPR014476 | GO:0003680 | |
Lsi05g01697 | 280 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 6 | 275 | IPR014476 | GO:0003680 | |
Lsi05g01697 | 280 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 86 | 213 | - | - | |
Lsi05g01697 | 280 | ProSiteProfiles | PPC domain profile profile. | 85 | 226 | IPR005175 | - | |
Lsi05g01697 | 280 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 89 | 201 | IPR005175 | - | |
Lsi05g01697 | 280 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 | 6 | 275 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00903 | Lsi-Chr4:9064455 | Lsi05g01697 | Lsi-Chr5:24537270 | 5.41E-75 | dispersed | |
Lsi05g01697 | Lsi-Chr5:24537270 | Lsi05g01920 | Lsi-Chr5:26394918 | 1.06E-73 | dispersed | |
Lsi11g00415 | Lsi-Chr11:4359591 | Lsi05g01697 | Lsi-Chr5:24537270 | 3.67E-72 | dispersed | |
Lsi05g01697 | Lsi-Chr5:24537270 | Lsi09g01252 | Lsi-Chr9:20189174 | 6.48E-86 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g01697 | - | - | csv:101214931 | 484.182 |