Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01697 ATGTCCTTTGTCGTTAGTACTAAGGTGGGGTTGTCCGGGGTTGATCATCATCACCCGGCGGCGATCAACAACTCTCCCATCTTCAAACAAAGCGATGAAAACAGCGGTGGTAGTAGAGACGACGATGACGACGACAACAACCGCGACGAGCCTAGAGAAGGCGCGGTGGAGGCCGGAACACGGAGGCCAAGAGGCCGTCCACCTGGATCTAAAAACAAACCCAAACCCCCAATCTTCGTCACACGTGACAGTCCCAACGCCCTTCGGAGCTACGTCCTAGAGGTAGCCGCCGGATCCGACGTGGCGGACTCCATCGCTCAATTCGCCCGTAAACGCCAGCGTGGCGTCTGCGTCCTCAGTGCAACCGGCTTAGTCGCTAACGTCACCTTACGTCAGCCCGCTGCTCCCGGTTCCGTAATGCCACTCCAAGGAAGGTTTGAGATTCTCTCTTTAACCGGCGCTTTTTTACCCGGTCCGGCCCCACCTGGTTCTACTGGCCTGACCGTTTACTTGTCCGGCGGTCAGGGGCAGGTCGTCGGTGGGAGCGTCGTTGGCTCACTTGTGGCTGCCGGACCCATTATGGTAATTGCAGCCACTTTTGCTAATGCCACTTATGAAAGGTTGCCTCTTGAAGATCCCGACGACCATGAAGTTGGAAGTGGCTCCGCCTCACACGGCGGTCCTAGAAGTCCTCCGCCGGAAATTAGAGCCACTGGAGGAGGGCAGATGCCAACTGGGATGCCGGAACCGACTTTGCCGTTGTATAATTTACTGCCGGATATGATTCCCAACGGCGTTCAGCTTGGCCACGACGGGTATGCTTATGTCCGGCCGCCGTATTGA 843 56.94 MSFVVSTKVGLSGVDHHHPAAINNSPIFKQSDENSGGSRDDDDDDNNRDEPREGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFANATYERLPLEDPDDHEVGSGSASHGGPRSPPPEIRATGGGQMPTGMPEPTLPLYNLLPDMIPNGVQLGHDGYAYVRPPY 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24537270 24539583 - Lsi05G016970.1 Lsi05g01697 664189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01697 280 MobiDBLite consensus disorder prediction 1 83 - -
Lsi05g01697 280 Gene3D - 88 217 - -
Lsi05g01697 280 MobiDBLite consensus disorder prediction 211 248 - -
Lsi05g01697 280 CDD DUF296 89 171 IPR005175 -
Lsi05g01697 280 PIRSF ESCAROLA 5 279 IPR014476 GO:0003680
Lsi05g01697 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 275 IPR014476 GO:0003680
Lsi05g01697 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 213 - -
Lsi05g01697 280 ProSiteProfiles PPC domain profile profile. 85 226 IPR005175 -
Lsi05g01697 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 201 IPR005175 -
Lsi05g01697 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 6 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00903 Lsi-Chr4:9064455 Lsi05g01697 Lsi-Chr5:24537270 5.41E-75 dispersed
Lsi05g01697 Lsi-Chr5:24537270 Lsi05g01920 Lsi-Chr5:26394918 1.06E-73 dispersed
Lsi11g00415 Lsi-Chr11:4359591 Lsi05g01697 Lsi-Chr5:24537270 3.67E-72 dispersed
Lsi05g01697 Lsi-Chr5:24537270 Lsi09g01252 Lsi-Chr9:20189174 6.48E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01697 - - csv:101214931 484.182