Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01699 ATGGAGCCAAACAGCATTCTACAAGAGAAAGTTAAGAAGCTTCGATCCGCGGTCGGCCCCGACTTGCCGGATTCCTTCATTCAACGGACGCTGTTGACAAACGGTGGTGACCCAGACGACGCTATTAAATACATTCTTGAAAACCCTGGGTTTTTGGCCAGGCCTCTGTCTGTTGTACGGACGGTCACTAGCACCGGAGCTCGAGTTTCCACACAGTTCATGCAGGATGATTCTATGGAGTCCGAGGAGGAAGCGAAACCGACAGTACTAGTGAAGGAGGAACCGGGTTTAGGGTTTGAAGATAAAGGCATAGAGAACAGGGGAGTGAAGTCGGATCGTCCAGAGGGTTTGCCAAAGGTCATCGGAACGTGGGAAACGAGATTCGACGAGTTTCTTAAACAGACAAACACGAAAGTGATGAGCGATGAGGAGTATAGCAAGACCCCCAAGGGAAATCCGGCTGCAGAAGGGGCCAAACCGAGTGCGAAGATTCAAGTAAAGGAGGAAGCAGTTGAGACGATTGCACAACCTGGTGCTAACACAAATGCGAGAGTAAAAGAAGAACCAGATTTGGAGTTTAAGAACAGAGTATTTGCAAAAGAAGCAAGCTCTAGGGTTGAAAACTTTGCAAAGTCGGTTTCAAGCAAGTCAAGAATGAGTTCGGTTGATTCAAGTTGCATGCAGAAGAATGCGACATTGTCTAATGATGGGAGGTGCAAGATTGAAGATGGGGATTTCCCTATTGAGCCCGATTGGTTTTTGGTGGGAAGGACAGTGGTCACAGCCATGTCCACCACGAAAGGGAACAAATTAGCAGATAATGAAATTGTTAATTTTGCATTTCCTTCTTCAAGTTCAAGATTCAATGCGCAATGGATTGTTCGCTTTTCAACTAAAAGAAGTGGAGAGATTGGTCGCCTACCAATGGAGTGGGCAAAATGTGTAGTTCCACTTGTCAACTCCCGGAAAGTTAAAATTCTTGGACGGTGTATAGCCGCACAAGGAAACCTTCACATAATGCAAGAAATCCTTCTATACGTCAGCTTTTATATCCATAGTTCGGTATTCTCAGACATTGATACAGTTACATGGAAGTTGGAGGCTACACACATTGACTCTACAATTTATCCTCTTCTTACCCTTTTCAAATTACTGAAAATCACACCATACCAGAAGGCTGAATTTACACCAGAAGAACTTGATTCACGGAAGCGTATGCTGAAGCTTGAAGATGATCCAGATGAATCGGCATCAATGCTACCTATCGTGAAGCGAAGAAAGGGATCCCAGCAATTTGCAGATCAAAACAAAGATGACCAAACTCTTAATGAATCATCACTGACTAAGCTTGTTGGTGCCGCAGATATGTATAATTTGGATGAAATGGAGCCTCCACGTACATTAACATGCGATCTTAGGCCTTATCAGAAGCAAGCTCTATTCTGGATGTCTGAGTTAGAGAAGGGGATTGATGTTGAGAAGGCTGCACAAACCCTTCATCCATGCTGGTCAGCCTATCGTGTCTGTGATGAGAGAGCAACCTCAATCTATGTAAACATTTTCTCTGGGGAATCAACTACAAAATTCCCAACTGCAACACAGATGGCAAGAGGAGGAATTCTCGCGGATGCAATGGGGCTTGGAAAGACTGTTATGGCAATTTCTCTTATACTTGCTAGGATGGGCAAAGGATGCCCTGATGACCAAAAGGCCGCAGCGAATAAGAATGTTACTACAGAGAGAAAAGGTCAGAAATCCACAAATAAAGCAAGGGGTGGGACCCTTATTGTTTGTCCAATGGCTTTGCTGGGCCAATGGAAGGAGGAACTTGAAATACATTCAGAGCCTGAAAGTATTTCCATATTTGTTCACTATGGTGGTGATAGAACCAACAACCCAGAGGTGCTATCAGGATATGATGCTGTCTTGACAACGTATGGTGTCCTAACATCAGCCTATAAGAGTGATGGAGAGTTTAGTATTTACCACAGAGTTGATTGGTACAGAGTGGTGCTAGATGAAGCCCATACAATTAAATCATCAAAGACGCAAACTGCACAGGCTGCCTTTACACTGAACTCATATTGCCGGTGGTGTCTTACTGGAACCCCCCTCCAGGTAGTAAAACGGATTCGGTCACAAGATAAGGACTACTTTATAATTTGTGGTATAGCAACTTATTCAAAACCGTATTTCTTGCTACAGAATAACTTGGAAGACCTTTTCAGCCTCTTATGCTTCTTGCGAGTGGAACCATGGTGCAATTGGGCATGGTGGAACAAGTTGATTCAAAGGCCTTATGAAAATGGTGATCCTAGAGGCTTGCGATTGATCAAGGCTATCCTGAGGCCACTTATGTTGAGGAGAACTAAAGATACAAAGGATGCAGAAGGAAGGCCTATTCTTGTTCTCCCTCCTACTGATATTCAAACCATCACGTGTGAACAGTCTGAGGCTGAACATGATTTTTATGATGCATTTTTTAAGAGATCAAAAGTCCAGTTTGACCAGTTTGTGGCACAAGGAAAGGTTCTCCACAACTATGCGAACATCCTCGAGCTCTTGCTTCGACTTAGGCAGTGTTGCAACCACCCATTTCTTGTAATGAGCCGAGGAGATTCACAACAGTATGCCAACTTGAACAAGCTTGCAAGAAAGTTCCTTGAATCCAACAGTAATTCTACAACAATGGAGCAGGCTACACCGACTCGAGCATATGTCGAAGAGGTTGTTGAATGCATTCGGCGAGGTGAAAACACCGAGTGCCCAATATGTATGGAGTTTGCTGACGATGCAGTGCTAACCCCATGTGCTCACAGGATGTGTAGGGAGTGTCTCCTCTCAAGCTGGAGGACCCCGACATGTGGGCTCTGCCCAATTTGTAGGCAATTGCTGAGGAAAACTGACCTCATAACATGTCCATCAGAAAACCCTTTTCGTGTGGATGTTGAGAAGAACTGGAAGGAGTCTTCAAAAGTATCAAAACTGCTGGAATGCTTGGAACAGATTAATCAGTCGGGTTCTGGTGAAAAGAGCATTGTTTTTAGCCAGTGGACTACGTTTTTTGATCTATTAGAGATTCCCTTGAAGAGGAAAAGAATTGGATTCTTCAGATTTGATGGGAAGCTGTCGCAGAAGCATAGGGAAATAGTTCTAAAAGAGTTCAGTGAAAGCAAGGAGAAAAAGGTGATGCTAATTTCTCTAAAAGCTGGTGGGGTTGGATTGAATCTAACCGCAGCTTCAAATGTCTTCATAATGGATCCATGGTGGAATCCTGCGGTTGAGGAACAAGCAATCATGAGGATCCATCGTATTGGTCAGAAGAGGACAGTCCGTATCAGAAGATTCATTGTCAAGGACACCGTGGAGGAACGCATGCAACAAGTTCAGGCGAGGAAGCAGCGGATGATCGCCGGTGCCCTCACTGACGAGGAAGTTCGAACGGCCAGGATTGAAGAGCTCAAGATGCTCTTTAGATAA 3480 44.43 MEPNSILQEKVKKLRSAVGPDLPDSFIQRTLLTNGGDPDDAIKYILENPGFLARPLSVVRTVTSTGARVSTQFMQDDSMESEEEAKPTVLVKEEPGLGFEDKGIENRGVKSDRPEGLPKVIGTWETRFDEFLKQTNTKVMSDEEYSKTPKGNPAAEGAKPSAKIQVKEEAVETIAQPGANTNARVKEEPDLEFKNRVFAKEASSRVENFAKSVSSKSRMSSVDSSCMQKNATLSNDGRCKIEDGDFPIEPDWFLVGRTVVTAMSTTKGNKLADNEIVNFAFPSSSSRFNAQWIVRFSTKRSGEIGRLPMEWAKCVVPLVNSRKVKILGRCIAAQGNLHIMQEILLYVSFYIHSSVFSDIDTVTWKLEATHIDSTIYPLLTLFKLLKITPYQKAEFTPEELDSRKRMLKLEDDPDESASMLPIVKRRKGSQQFADQNKDDQTLNESSLTKLVGAADMYNLDEMEPPRTLTCDLRPYQKQALFWMSELEKGIDVEKAAQTLHPCWSAYRVCDERATSIYVNIFSGESTTKFPTATQMARGGILADAMGLGKTVMAISLILARMGKGCPDDQKAAANKNVTTERKGQKSTNKARGGTLIVCPMALLGQWKEELEIHSEPESISIFVHYGGDRTNNPEVLSGYDAVLTTYGVLTSAYKSDGEFSIYHRVDWYRVVLDEAHTIKSSKTQTAQAAFTLNSYCRWCLTGTPLQVVKRIRSQDKDYFIICGIATYSKPYFLLQNNLEDLFSLLCFLRVEPWCNWAWWNKLIQRPYENGDPRGLRLIKAILRPLMLRRTKDTKDAEGRPILVLPPTDIQTITCEQSEAEHDFYDAFFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRGDSQQYANLNKLARKFLESNSNSTTMEQATPTRAYVEEVVECIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPICRQLLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFSQWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHREIVLKEFSESKEKKVMLISLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRIRRFIVKDTVEERMQQVQARKQRMIAGALTDEEVRTARIEELKMLFR 1159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24548561 24554684 - Lsi05G016990.1 Lsi05g01699 664191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01699 1159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 915 970 IPR013083 -
Lsi05g01699 1159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 992 1159 IPR001650 -
Lsi05g01699 1159 SUPERFAMILY RING/U-box 919 972 - -
Lsi05g01699 1159 Pfam SNF2-related domain 475 867 IPR000330 GO:0005524|GO:0140658
Lsi05g01699 1159 SMART helicmild6 1023 1106 IPR001650 -
Lsi05g01699 1159 MobiDBLite consensus disorder prediction 569 588 - -
Lsi05g01699 1159 Pfam HIRAN domain 256 347 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lsi05g01699 1159 CDD SF2_C_SNF 990 1117 - -
Lsi05g01699 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 789 IPR027417 -
Lsi05g01699 1159 SMART HIRAN_2 255 351 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lsi05g01699 1159 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 530 722 IPR014001 -
Lsi05g01699 1159 CDD CUE 8 46 - -
Lsi05g01699 1159 MobiDBLite consensus disorder prediction 140 160 - -
Lsi05g01699 1159 CDD DEXDc_SHPRH-like 472 789 - -
Lsi05g01699 1159 Pfam Zinc finger, C3HC4 type (RING finger) 922 961 IPR018957 GO:0046872
Lsi05g01699 1159 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 388 1159 - -
Lsi05g01699 1159 Pfam Helicase conserved C-terminal domain 995 1106 IPR001650 -
Lsi05g01699 1159 ProSitePatterns Zinc finger RING-type signature. 937 946 IPR017907 -
Lsi05g01699 1159 ProSiteProfiles Zinc finger RING-type profile. 922 962 IPR001841 -
Lsi05g01699 1159 Gene3D - 805 1159 IPR027417 -
Lsi05g01699 1159 ProSiteProfiles CUE domain profile. 6 50 IPR003892 GO:0043130
Lsi05g01699 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 802 1149 IPR027417 -
Lsi05g01699 1159 SMART ring_2 922 961 IPR001841 -
Lsi05g01699 1159 SMART ultradead3 468 736 IPR014001 -
Lsi05g01699 1159 Gene3D - 526 790 IPR038718 -
Lsi05g01699 1159 PANTHER DNA REPAIR PROTEIN RAD5B 388 1159 - -
Lsi05g01699 1159 CDD RING-HC 922 961 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01699 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-] - csv:101214691 2004.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00083 Lsi-Chr3:1184858 Lsi05g01699 Lsi-Chr5:24548561 1.11E-99 dispersed
Lsi04g00030 Lsi-Chr4:452680 Lsi05g01699 Lsi-Chr5:24548561 5.18E-06 dispersed
Lsi05g01699 Lsi-Chr5:24548561 Lsi09g00848 Lsi-Chr9:9756079 1.14E-92 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0310 Cone4ag0312 Lsi05g01699 . . Cme06g00516 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00464 Cam05g0505 Cec05g0518 Cco05g0519 Clacu05g0506 Cmu05g0482 Cre05g0546 . Csa03g01237 Chy06g00490 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi10g00118 . 103 823 RAD5/RAD16-like Gene Family AT1G05120 55.9 1.8e-240 829.3
Lsi01g00337 . 277 1266 RAD5/RAD16-like Gene Family AT1G11100 51.1 1.9e-239 826.2
Lsi09g00848 . 270 1048 RAD5/RAD16-like Gene Family AT1G11100 50.7 4.3e-199 692.2
Lsi09g00848 . 11 939 RAD5/RAD16-like Gene Family AT1G50410 51.6 2.0e-234 809.3
Lsi01g00337 . 399 1266 RAD5/RAD16-like Gene Family AT1G61140 59.1 7.2e-266 914.1
Lsi09g00848 . 260 1047 RAD5/RAD16-like Gene Family AT1G61140 55.1 4.9e-222 768.5
Lsi03g00083 . 82 1227 RAD5/RAD16-like Gene Family AT5G22750 61.1 0.0e+00 1315.4
Lsi05g01699 . 251 1158 RAD5/RAD16-like Gene Family AT5G22750 54.0 8.0e-288 986.9
Lsi05g01699 . 240 1159 RAD5/RAD16-like Gene Family AT5G43530 69.8 0.0e+00 1308.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014742 0 0 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 1 19
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25404 PF00176 SNF2_N 4.40E-74 CL0023 Lsi TR