Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01704 ATGGGGTTCTTCTCCTTCCTTGGACGGCTCCTCTTTGCCTCCATCTTCATCCTATCCGCCTGGCAGATGTTTAATGAGTTTGGCAATAACGGTGGGCTAGCAGCCGCGGAATTGTCTTCAAAGGTAGCTGTTTTGAGGAGAAATTTATCATCCAAGTTGGGGGTAGCAATACCTGATATTGATGTCAGACACTTGGTTGCCATTTCTTTATCTCTTAAAGGGATTGGAGGCCTTCTGTTTGTTTTTGGCAGCAGAGTTGGAGCTTATCTCCTACTTCTGCAATTGGTTATTATCACCCCGGTTCTTTTTGATTTCTTCAACTATAGCCCTCAGAAACCTACTTTCGGTATCCCGTTACCTGATTTCTTGCAGCGTCCTGCAGACTGCAGCAAGACGAACGCCTTCGCCATGGATTACCTGAAATCAGTTGTACCTTCACAACTTATTTCCGAACGAGGTTCAAATTTGGTAGTGATAAACCCAGGATCTGCAAATATTAGGATTGGACTTGCATCGCAGGATGTTCCCTTTAATGTTCCTCATTGCATTGCTCGTTATACCAATCAAGTGCCCAAGAGAAATGTTCAAGATCAGATGCTTAATTCACAAGTTACAACTGCACAGCACATGGAGCGGGAGAGGGCATATGATGTTATTGCCTCGTTGCTAAAAATACCGTTTCTAGATGAAGAGGTTGCTAACAGTTCTTTCCCACGCAAGATGGGACGAGTTGATGGACATAATATGCATAATGGCAAGAAGGATAGTGTCTTTAGTTGGACTGACGTACATGAGAGGGACCTTACTTCGCCAGTGGCAGTTGAAAGTTCAAGCTCCAAGGATGTGAACCATGAGCCTTCGGACCAGCACGTAGATACTGATTCCAAGGAGCTTAGTTCTAGTGTAATTAAATATAGACAGTTTATTTGCGGTGAGGATGCTCTTAAAATATCACCCAGTGAGCCATATTGCGTGCACCGTCCTATTCGCAGAGGTCACTTGAATATCTCACAGCATTACCCTACACAACAGGTACTTGAGGACTTGCATGCTATTTGGGACTGGGTTTTGATAGAAAAATTGCATATCCCTAATAGTGAAAGAAACTTGTATTCTGCTATTCTGGTGGTCCCAGAAACATTTGACAACCGCGAAATAAAGGAGATTTTGACAATAGTATTGCGAGATTTGCGGTTCGGTTCAGCAGTGGTTCATCAGGAAGGGCTTGCTGCAGTTTTTGGGAATGGACTATCTTCAGCATGTGTTGTTAACATGGGAGCACAGGTGACAACAATTATTTGCATCGAGGATGGAGTTGCCCTGCCTGCCACAGCAAAGACTTTGCCATTTGGTGGAGAGGACTTATCTAGATGCCTCCTGTGGACTCAAAGGCATCACCAAACTTGGCCACCGATTCGTACAGACATCTTATCGAAGCCTGTAGATCTTCTGATGCTTAATAGACTGAAAGAGTCATACTGTGAGATTAGGGAAGGGGAGGTCGATGCCGTTGCTGTAGTTCATTCATATGAAGAAGGCGCCCCTGCTGGTTCTCATAAAACAAGACTGACTGCACTTAATGTACCACCTATGGGTTTGTTCTTCCCAATGCTATTGGTTCCGGATGTGTATCCACCACCACCCCGTGCATGGTTTCATGACTATGAGGATATGCTGGAAGAGACATGGCAGACAGAGTACGCCAGAAGACCTGATGTACCAGATAATGTATATCCTGGCGTTAACGTTAATTTCCCAATGTGGGATAGCTACCCGGTTTATGCAACTAAACCAAAGAAAGAAGAGAAAGTTGGCCTTGCTGAAGCTATCGCAAGCAGTATCCTCTTAACAGGGCGGATTGATCTCCAGAGGAAACTGTTCTTAAGCATACAGTTAGTAGGTGGGGTGGCTTTGACAAGGGGTCTTATTCCTGCAATGGAGGAAAGAGTCTTGCATGCAATTCCTTCAAATGAAGCAATAGACACTGTTGAGGTGTTGCAATCAAGAACAAACCCTTCTTTTGTATCATGGAAAGGTGGAGCGATTATCGGAGTCCTTGACTTTGGGCGGGATGCTTGGATACATCGTGAAGACTGGATTAACAGTGGAATTTTTACTGGAAGTGGCAGAAAATACAAGGATTCTTACTATCTTCAAGCACAAGCCATTTGCTACATGAATTCCTAA 2187 44.22 MGFFSFLGRLLFASIFILSAWQMFNEFGNNGGLAAAELSSKVAVLRRNLSSKLGVAIPDIDVRHLVAISLSLKGIGGLLFVFGSRVGAYLLLLQLVIITPVLFDFFNYSPQKPTFGIPLPDFLQRPADCSKTNAFAMDYLKSVVPSQLISERGSNLVVINPGSANIRIGLASQDVPFNVPHCIARYTNQVPKRNVQDQMLNSQVTTAQHMERERAYDVIASLLKIPFLDEEVANSSFPRKMGRVDGHNMHNGKKDSVFSWTDVHERDLTSPVAVESSSSKDVNHEPSDQHVDTDSKELSSSVIKYRQFICGEDALKISPSEPYCVHRPIRRGHLNISQHYPTQQVLEDLHAIWDWVLIEKLHIPNSERNLYSAILVVPETFDNREIKEILTIVLRDLRFGSAVVHQEGLAAVFGNGLSSACVVNMGAQVTTIICIEDGVALPATAKTLPFGGEDLSRCLLWTQRHHQTWPPIRTDILSKPVDLLMLNRLKESYCEIREGEVDAVAVVHSYEEGAPAGSHKTRLTALNVPPMGLFFPMLLVPDVYPPPPRAWFHDYEDMLEETWQTEYARRPDVPDNVYPGVNVNFPMWDSYPVYATKPKKEEKVGLAEAIASSILLTGRIDLQRKLFLSIQLVGGVALTRGLIPAMEERVLHAIPSNEAIDTVEVLQSRTNPSFVSWKGGAIIGVLDFGRDAWIHREDWINSGIFTGSGRKYKDSYYLQAQAICYMNS 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24566769 24584296 - Lsi05G017050.1 Lsi05g01704 664196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01704 728 Gene3D Actin; Chain A, domain 4 438 539 - -
Lsi05g01704 728 SUPERFAMILY Actin-like ATPase domain 154 423 IPR043129 -
Lsi05g01704 728 PANTHER ACTIN-RELATED PROTEIN 8 139 710 IPR027668 GO:0006338|GO:0031011
Lsi05g01704 728 SUPERFAMILY Actin-like ATPase domain 416 704 IPR043129 -
Lsi05g01704 728 PANTHER ACTIN 139 710 IPR004000 -
Lsi05g01704 728 Pfam HR-like lesion-inducing 1 125 IPR008637 -
Lsi05g01704 728 Gene3D - 604 675 - -
Lsi05g01704 728 SMART actin_3 154 716 IPR004000 -
Lsi05g01704 728 MobiDBLite consensus disorder prediction 281 296 - -
Lsi05g01704 728 Gene3D - 148 263 - -
Lsi05g01704 728 Gene3D - 264 432 - -
Lsi05g01704 728 MobiDBLite consensus disorder prediction 269 296 - -
Lsi05g01704 728 Pfam Actin 155 703 IPR004000 -
Lsi05g01704 728 Gene3D - 676 703 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01704 K11673 ACTR8, ARP8, INO80N; actin-related protein 8 - csv:101213005 1162.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01704 Lsi09g01248 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01704 Lsi-Chr5:24566769 Lsi09g01248 Lsi-Chr9:20150945 1.58E-45 dispersed
Lsi05g01704 Lsi-Chr5:24566769 Lsi09g01247 Lsi-Chr9:20134469 1.29E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g650 . . . . . . . . Cmo08g01069 Cmo17g00170 . Cma14g01800 Car06g01147 Car14g01617 . . Cpe03g01508 . . . . . . . Cla06g00649 Cam06g0694 Cec06g0698 Cco06g0704 Clacu06g0681 Cmu06g0672 Cre06g1441 . . Cone7ag0312 Cone4ag0315 Lsi05g01704 Csa02g01078 Chy05g00338 . . . Bda11g00623 Bda13g00073 . . Bma02g00794 Bma06g01594 Sed09g0698 . Cmo14g01838 Cma08g01093 Cma17g00173 Car08g00968 Car17g00153 Cpe12g00149 Cpe17g00186 Bhi12g01639 Tan06g2429 Cmetu05g0143 . . . Lcy13g0355 . . . . . . . Lsi09g01248 . . Cme05g00547
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011275 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 31