Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01718 ATGAAGGATTTTCCTGGGACTCCTGGGACTGCGACGGGGCTAATTCTGAGGATTTTGCAGTGTGTTTTTGCTGCTGCCTCTATTGCTTCTATGGCTTCAACTTCTTACTTCTTCAAATTCACAGCTTTTTGCTACCTGATTGCTTCATTGGGGTTGCAAATCACCTGGAGTTTTGTGTTAGCATTAATCGACGCCTATGCGCTGGTGAGAAACAAATCCCTACAGAGCACTGTGCTGATTAGCCTCTTCGTCGTCGGGGATTGGATTACAGCAACATTGACACTCGCAGCAGCTTCTTCTTCAAGTGGGGTAGCAATATTGTATTTTAATGACTTGAAAAGCTGTAGTTTTATAGGGGAATGCCAAAAATACCAACTCTCAGTGGCCTTGGCATTCCTCAGCTGGATAACTATTGCTACTTCTTCTCTTATTATGGTTTGGCTATTGGCTTCCAGTTAA 459 43.57 MKDFPGTPGTATGLILRILQCVFAAASIASMASTSYFFKFTAFCYLIASLGLQITWSFVLALIDAYALVRNKSLQSTVLISLFVVGDWITATLTLAAASSSSGVAILYFNDLKSCSFIGECQKYQLSVALAFLSWITIATSSLIMVWLLASS 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24644599 24646411 + Lsi05G017180.1 Lsi05g01718 664210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01718 152 Pfam Casparian strip membrane protein domain 8 136 IPR006702 -
Lsi05g01718 152 PANTHER CASP-LIKE PROTEIN 5B3 1 150 IPR045009 -
Lsi05g01718 152 PANTHER CASP-LIKE PROTEIN 5B3 1 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01718 - - - csv:101211061 271.166
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01718 Lsi09g01244 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00045 Lsi-Chr3:749846 Lsi05g01718 Lsi-Chr5:24644599 5.22E-32 dispersed
Lsi03g00353 Lsi-Chr3:4187062 Lsi05g01718 Lsi-Chr5:24644599 4.43E-36 dispersed
Lsi05g01718 Lsi-Chr5:24644599 Lsi10g01264 Lsi-Chr10:16914773 5.19E-32 dispersed
Lsi05g01718 Lsi-Chr5:24644599 Lsi09g01244 Lsi-Chr9:20086068 1.73E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g670 . . . Bda08g00271 . Bpe14g01244 . Bma05g01071 Cmo08g01065 Cmo17g00168 . Cma14g01804 . Car14g01621 . . Cpe03g01511 . . . . . . . Cla06g00653 Cam06g0698 Cec06g0703 Cco06g0711 Clacu06g0685 Cmu06g0676 Cre06g1445 Cone14ag0145 Cone15ag0153 . Cone4ag0318 Lsi05g01718 Csa02g01075 Chy05g00335 Cme06g00506 Blo02g00734 . . Bda13g00072 Bpe05g00862 . Bma02g00793 . . . Cmo14g01841 Cma08g01090 . Car08g00965 Car17g00151 Cpe12g00147 Cpe17g00188 Bhi12g01634 . . Lac12g2190 . . Lcy13g0363 Cla05g00456 Cam05g0497 Cec05g0506 Cco05g0505 Clacu05g0492 Cmu05g0469 Cre05g0532 Lsi09g01244 Csa03g01222 Chy06g00484 Cme05g00551
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002291 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 3 2 3 3 2 2 1 2 2 3 2 2 3 2 1 63